Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1558 583 1e-161 >seq1558 Length=203828 Score = 583 bits (646), Expect = 1e-161 Identities = 744/1021 (73%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 161512 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCT 161571 |||||||||| | ||| ||||||||| | ||| |||||||| || || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 161572 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACT 161631 || | | || || || |||||| |||| | || |||||| | ||||| || ||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 161632 TTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTT 161691 |||| ||| |||||||| ||||| | |||| ||| || | || ||| || || Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 161692 CTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGG 161751 | ||||| || ||| || || ||| || ||||| ||| |||||||| || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 161752 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 161811 ||||| || |||||||| |||||| | ||| |||||||| || | ||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 161812 GTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCT 161871 || || | ||||| || || | | | ||||| ||||||||||||||||||||| ||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 161872 CGTCTTATCGGTA----TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 161927 ||| || ||| | ||||| ||||| || ||||||||||| | || |||||||| Sbjct 175233 CGT----TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGT 175178 Query 161928 TTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATC 161987 || || || || || || || || | || || || |||||||| || || | Sbjct 175177 ATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACC-TA 175119 Query 161988 GTTTGGG-GTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGA 162046 |||| || || || ||||| ||| | ||| | | ||| | |||||||||||||| |||| Sbjct 175118 GTTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGA 175059 Query 162047 CGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTG 162106 | ||||| || ||||||||||||||||| || ||| | || |||| |||||| | | || Sbjct 175058 CACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 174999 Query 162107 CTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTT 162166 |||||||||||| |||||||||||||| | | | |||| ||||| || || || | Sbjct 174998 CTATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACAT 174939 Query 162167 TCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTT 162226 || || || || |||| || | || || || ||||| ||||||||||| ||||||| Sbjct 174938 TCCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTT 174879 Query 162227 TCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGC 162286 |||||||||| ||||||||| ||||||| ||| || |||||| | || ||||| ||| Sbjct 174878 TCTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGT 174819 Query 162287 TCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTA 162346 | || ||||| || | ||||| |||| ||| |||| ||| || | || | ||||| | Sbjct 174818 TATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAA 174759 Query 162347 ATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTG 162406 | | |||||||||||||| ||||| || ||||||||||| || || || |||||||| | Sbjct 174758 ACTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCG 174699 Query 162407 AAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAG 162466 |||| |||||||| || || || || | || |||||| ||||||| ||| |||| | Sbjct 174698 AAACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTC 174639 Query 162467 TTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCAC 162526 || ||||| || || || ||||||||||| ||||| | || | |||||||| | Sbjct 174638 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTC 174579 Query 162527 T 162527 | Sbjct 174578 T 174578 Score = 226 bits (250), Expect = 3e-54 Identities = 217/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 160509 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGC 160568 |||| ||||| |||||| | ||||||||||| || || || |||||||| || || | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 160569 ACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTA 160628 |||||||| | ||||||||||| || | || || ||||||||||| | ||| | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 160629 CCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGAC 160688 | ||||||||||| | || ||||||||||||||||| || | | ||| ||||| | Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 160689 AAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGC 160748 || || ||||||||||||||| | | ||||| ||| | || |||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 160749 ACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCT 160786 |||||||||||||||||||||||||||| ||| | ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 226 bits (250), Expect = 3e-54 Identities = 217/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 160509 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGC 160568 |||| ||||| |||||| | ||||||||||| || || || |||||||| || || | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 160569 ACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTA 160628 |||||||| | ||||||||||| || | || || ||||||||||| | ||| | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 160629 CCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGAC 160688 | ||||||||||| | || ||||||||||||||||| || | | ||| ||||| | Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 160689 AAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGC 160748 || || ||||||||||||||| | | ||||| ||| | || |||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 160749 ACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCT 160786 |||||||||||||||||||||||||||| ||| | ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 196 bits (216), Expect = 5e-45 Identities = 182/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 160280 ATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160339 |||||||||||||| |||| ||| | |||||||||||||||||||| ||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 160340 CCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCAT 160399 || ||||||||| | ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 160400 GGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTAT 160459 || ||| | |||||||| | | || | || || || |||| || || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACAT 160510 |||||| ||||||||||| ||||| ||||||||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 196 bits (216), Expect = 5e-45 Identities = 182/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 160280 ATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160339 |||||||||||||| |||| ||| | |||||||||||||||||||| ||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 160340 CCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCAT 160399 || ||||||||| | ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 160400 GGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTAT 160459 || ||| | |||||||| | | || | || || || |||| || || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACAT 160510 |||||| ||||||||||| ||||| ||||||||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 161 bits (178), Expect = 1e-34 Identities = 143/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 159935 GATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGT 159994 ||||| ||||||||||| || | ||||| || | ||||||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 159995 GCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCA 160054 || || | || |||| |||||||| |||||||||||||| || ||||||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 160055 TCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCT 160113 || || ||||||||| | || ||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 53806 Score = 161 bits (178), Expect = 1e-34 Identities = 143/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 159935 GATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGT 159994 ||||| ||||||||||| || | ||||| || | ||||||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 159995 GCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCA 160054 || || | || |||| |||||||| |||||||||||||| || ||||||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 160055 TCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCT 160113 || || ||||||||| | || ||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 140397 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 160139 CGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCT 160198 |||||||||||| | |||| |||| | ||||||||||| |||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 160199 GCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTC 160258 |||||||| ||||| ||||| ||||||||| | || ||||| |||| || ||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 160259 TCCGATGCTATGCCTCTTGGT 160279 || || | ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 160139 CGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCT 160198 |||||||||||| | |||| |||| | ||||||||||| |||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 160199 GCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTC 160258 |||||||| ||||| ||||| ||||||||| | || ||||| |||| || ||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 160259 TCCGATGCTATGCCTCTTGGT 160279 || || | ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||||||| ||| | | ||||| ||| | |||||| |||| |||||||||||||| Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 55247 Query 159922 CCCTGTGGACATC 159934 || || |||||| Sbjct 55246 GCCAGTAGACATC 55234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||| | ||||| || | ||||| | || ||||||||||||| || | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||||||| ||| | | ||||| ||| | |||||| |||| |||||||||||||| Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 138956 Query 159922 CCCTGTGGACATC 159934 || || |||||| Sbjct 138957 GCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551365261952400