Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1558 560 1e-154 >seq1558 Length=203828 Score = 560 bits (620), Expect = 1e-154 Identities = 733/1014 (72%), Gaps = 8/1014 (1%) Strand=Plus/Minus Query 189998 TGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTT 190057 ||||||||||||| | ||| || || || || || |||||||| || ||| | || || Sbjct 175579 TGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATT 175520 Query 190058 TCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTG 190117 || |||||| | ||| | ||||| ||| | ||||| || || || | ||| || Sbjct 175519 CCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATG 175460 Query 190118 GTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGT 190177 ||| || || || | || | | |||| | || ||| ||| || | ||||| ||||| Sbjct 175459 GTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 175400 Query 190178 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCA 190237 || || |||||| | ||||| ||| |||||||| | |||||||||| ||| |||| Sbjct 175399 TTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCA 175340 Query 190238 AGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 190297 ||| |||||| | ||| |||||||| || | ||||| || || || | ||||| Sbjct 175339 AGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGG 175280 Query 190298 GGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA- 190356 || || | | ||||||| ||||||||||||||||||||| | || ||| || ||| Sbjct 175279 TGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT----TCAGTAA 175224 Query 190357 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 190413 | ||||| ||||| || ||||| ||||| | || || ||||| || ||| || | Sbjct 175223 ACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTAT 175164 Query 190414 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAG 190473 | || || ||||| | |||||||| |||||||||| || || |||||||| || | Sbjct 175163 TCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTG 175104 Query 190474 CGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCC 190533 | |||||||| ||| | | ||||| || || ||||| |||||||| || ||||| |||| Sbjct 175103 CTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCC 175044 Query 190534 ACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGA 190593 |||||||||||||||| ||| | | || | || || | | || || || |||| | Sbjct 175043 ACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTA 174984 Query 190594 CTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACT 190653 |||| || || || || | ||||| ||||| || ||||| || |||||| || Sbjct 174983 CTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACC 174924 Query 190654 CTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCT 190713 ||||||| | ||||| || || || ||||| ||||| |||||||||||||| ||||||| Sbjct 174923 CTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCT 174864 Query 190714 TTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTA 190773 | |||||||| ||| ||| || | ||| | || ||||| ||| | || ||||| || | Sbjct 174863 TCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAA 174804 Query 190774 TGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 190833 ||||| |||| | | || ||| || | ||| | ||||| ||| | |||||||| | Sbjct 174803 CTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACG 174744 Query 190834 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAA 190893 |||| ||||| |||||||| | || || ||||| || || ||||| || || ||||| | Sbjct 174743 ACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTA 174684 Query 190894 AAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATG 190953 |||| || ||| | || |||||| ||||| | ||| |||| || || ||||| || | Sbjct 174683 AAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACG 174624 Query 190954 AGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATATA 191007 | ||| ||||| || ||||||||||| ||| | || |||||||| | ||||| Sbjct 174623 AACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAATATA 174570 Score = 228 bits (252), Expect = 1e-54 Identities = 213/271 (79%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 189557 ATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTC 189616 |||| || || |||||||| ||||||||||| || || ||||||||||| |||||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 189617 ACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCA 189676 |||||||| | ||||| ||||| || | ||||| ||||| || || | || | | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 189677 CCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTC 189736 | |||||||||||| | || || ||||||||||| ||||| | | || ||||||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 189737 GTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGC 189796 |||| || ||||| ||||||||| | ||||||||||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 189797 ATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 | |||||||||||||||||||||||||| || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 228 bits (252), Expect = 1e-54 Identities = 213/271 (79%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 189557 ATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTC 189616 |||| || || |||||||| ||||||||||| || || ||||||||||| |||||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 189617 ACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCA 189676 |||||||| | ||||| ||||| || | ||||| ||||| || || | || | | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 189677 CCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTC 189736 | |||||||||||| | || || ||||||||||| ||||| | | || ||||||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 189737 GTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGC 189796 |||| || ||||| ||||||||| | ||||||||||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 189797 ATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 | |||||||||||||||||||||||||| || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 196 bits (216), Expect = 6e-45 Identities = 179/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392 ||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 51123 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 51064 Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 ||||||| | || || || ||||| |||||||||||| | ||||| || ||||| ||||| Sbjct 51063 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 51004 Query 189453 ACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTA 189512 | ||||| || || | | |||||||| ||||||| ||| || ||| | ||||| Sbjct 51003 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 50944 Query 189513 CAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCAT 189558 | || || |||||||||||||| |||||||| || ||||||||| Sbjct 50943 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 196 bits (216), Expect = 6e-45 Identities = 179/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392 ||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 143080 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 143139 Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 ||||||| | || || || ||||| |||||||||||| | ||||| || ||||| ||||| Sbjct 143140 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 143199 Query 189453 ACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTA 189512 | ||||| || || | | |||||||| ||||||| ||| || ||| | ||||| Sbjct 143200 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 143259 Query 189513 CAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCAT 189558 | || || |||||||||||||| |||||||| || ||||||||| Sbjct 143260 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 188983 GATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 189042 ||||| ||||| ||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 189043 GCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCC 189102 ||||| |||| | || |||||||| ||||||||||||||||| || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 189103 TCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTC 189162 || || || |||||| | |||||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 189163 ATCGGCATCTACGCCTACATGGGT 189186 | || | ||| |||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 188983 GATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 189042 ||||| ||||| ||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 189043 GCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCC 189102 ||||| |||| | || |||||||| ||||||||||||||||| || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 189103 TCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTC 189162 || || || |||||| | |||||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 189163 ATCGGCATCTACGCCTACATGGGT 189186 | || | ||| |||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 189187 CGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCT 189246 |||||||||||| | |||| |||| | ||||||||||| |||||| | |||||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 189247 GCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTC 189306 || || || || ||||| || || || || | || || ||| | || |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 189307 TCTGACGCAATGCCCTTGGGT 189327 ||||||| ||||| || ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 189187 CGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCT 189246 |||||||||||| | |||| |||| | ||||||||||| |||||| | |||||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 189247 GCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTC 189306 || || || || ||||| || || || || | || || ||| | || |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 189307 TCTGACGCAATGCCCTTGGGT 189327 ||||||| ||||| || ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||| |||| || ||| | |||||| | || |||||||||||||||| | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTG-CTTCATCGTCGCCTTTGTCGCTGCACC 188969 |||||||| ||||| |||||| |||| | |||||| |||| || ||||||| || Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCC 55247 Query 188970 CCCTGTAGACAT 188981 || |||||||| Sbjct 55246 GCCAGTAGACAT 55235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||| |||| || ||| | |||||| | || |||||||||||||||| | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTG-CTTCATCGTCGCCTTTGTCGCTGCACC 188969 |||||||| ||||| |||||| |||| | |||||| |||| || ||||||| || Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCC 138956 Query 188970 CCCTGTAGACAT 188981 || |||||||| Sbjct 138957 GCCAGTAGACAT 138968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634067651292000