Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1558 616 2e-171 >seq1558 Length=203828 Score = 616 bits (682), Expect = 2e-171 Identities = 753/1022 (74%), Gaps = 4/1022 (0%) Strand=Plus/Minus Query 163884 TGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 163943 |||||||||| | || ||||||||| | ||| || || || || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 163944 GGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACG 164003 || ||| | || || || |||||| ||||| | ||||| ||| | |||||||| || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 164004 TTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTTC 164063 || ||||| ||||| || || ||| | || || |||| | || ||| ||| ||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 164064 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 164123 | ||||| ||||| || || |||||| | ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 164124 GGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTT 164183 ||||| || |||| || || |||| | | ||||| |||||||| || | ||||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 164184 GTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCA 164243 || || || ||||| | || | | | || |||||||||||||| |||||||||||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 164244 CGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTT 164303 ||| ||| | ||||| ||||| || ||||| ||||| | || |||||||| || Sbjct 175233 CGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTC 175174 Query 164304 GTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTT 164363 || || ||||| || ||||| | || ||||| ||||||||||||| || | |||| Sbjct 175173 GTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACC-TAGTTT 175115 Query 164364 GGG-GTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACT 164422 || || || || |||||| | ||| | || ||| ||||||||||||| ||||||||||| Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 164423 CAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTAT 164482 ||||| ||||| |||||||||||||| || | | |||| |||| | | |||||||| Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 164483 TCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAA 164542 ||| |||||||| || || || || || || ||||| ||||| | || || ||| Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 164543 GGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTG 164602 |||||| | ||||| || | ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 164603 GTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTT 164662 ||| || || || ||| |||||||| || || |||||| | |||||||| ||| | || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 164663 TGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCT 164722 ||||| || | || ||||||| ||| |||||||| | | ||| | || || || | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 164723 TCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGAC 164782 |||||||| || || || || || |||||| | || || || || |||||||| || || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 164783 GTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 164842 ||||| || || ||||| || || || ||||| | ||||| ||||||||| | ||| Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 164843 CCAGCCACACGAATCGTTT-GTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCT 164901 ||| ||||||||| ||||| ||||| || || ||||| | || | |||||||| || | Sbjct 174634 CCAACCACACGAA-CGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTAT 174576 Query 164902 AA 164903 || Sbjct 174575 AA 174574 Score = 250 bits (276), Expect = 3e-61 Identities = 218/271 (80%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 161278 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGC 161337 |||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 161338 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCA 161397 |||||||| | || || ||||| || ||||||| ||||||||||| | ||| | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 161398 CCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCA 161457 | |||||||||||| | ||||| |||||||||||||| || | | || || || Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 161458 AAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGC 161517 || || ||||| ||||| ||| | | || ||||||||| | |||||||||||||||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 161518 ACGAGCGTAATGCTCACAACTTCCCTCTGGA 161548 |||||||||| ||||||||||||||||| || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 250 bits (276), Expect = 3e-61 Identities = 218/271 (80%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 161278 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGC 161337 |||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 161338 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCA 161397 |||||||| | || || ||||| || ||||||| ||||||||||| | ||| | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 161398 CCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCA 161457 | |||||||||||| | ||||| |||||||||||||| || | | || || || Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 161458 AAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGC 161517 || || ||||| ||||| ||| | | || ||||||||| | |||||||||||||||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 161518 ACGAGCGTAATGCTCACAACTTCCCTCTGGA 161548 |||||||||| ||||||||||||||||| || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 232 bits (256), Expect = 7e-56 Identities = 190/231 (82%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161049 ATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCAC 161108 ||||||||||| |||||||||||| | || ||||| ||||||||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 161109 CCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCAT 161168 || ||||||||||| |||||||||||||| ||||||||||| | ||||| || ||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 161169 GGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTAT 161228 ||||| | |||||||| || | | |||||||| ||||| ||||| || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCAT 161279 |||||| || |||||||||||||| || |||||||| || ||||||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 232 bits (256), Expect = 7e-56 Identities = 190/231 (82%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 161049 ATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCAC 161108 ||||||||||| |||||||||||| | || ||||| ||||||||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 161109 CCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCAT 161168 || ||||||||||| |||||||||||||| ||||||||||| | ||||| || ||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 161169 GGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTAT 161228 ||||| | |||||||| || | | |||||||| ||||| ||||| || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCAT 161279 |||||| || |||||||||||||| || |||||||| || ||||||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 188 bits (208), Expect = 8e-43 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 160704 GACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGT 160763 || |||||||||||||| ||| | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 160764 GCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCA 160823 || || | || |||| |||||||| ||||||||||||||||| |||||||||||||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 160824 TCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTG 160883 ||||| || || ||| | ||||| ||||||||||||||||| |||| | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 160884 ATCGGCATCTTCTGCTACATGGGT 160907 | || | | ||||||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 188 bits (208), Expect = 8e-43 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 160704 GACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGT 160763 || |||||||||||||| ||| | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 160764 GCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCA 160823 || || | || |||| |||||||| ||||||||||||||||| |||||||||||||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 160824 TCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTG 160883 ||||| || || ||| | ||||| ||||||||||||||||| |||| | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 160884 ATCGGCATCTTCTGCTACATGGGT 160907 | || | | ||||||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559317107087200