Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4919 300 2e-79 seq2426 82.4 1e-13 >seq4919 Length=2758 Score = 300 bits (332), Expect = 2e-79 Identities = 223/256 (87%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 1429 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 1372 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||| | ||| ||||||| Sbjct 1371 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGACGCGGTTTACAAGATTA 1312 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| |||| |||||||| | |||||||||||||||||||| Sbjct 1311 CCCGGGCCTCTCGGCCAAGG--ATAGGCTCGTTGATCGCGTCAGTGTAGCGCGCGTGCGG 1254 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| | Sbjct 1253 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAACG 1194 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 1193 CCAATAGTCCCTCTAA 1178 >seq2426 Length=13171 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 26 CGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAAT 85 |||||||| |||||||||||||||| ||| ||| ||||||||||||| | ||||||||| Sbjct 10598 CGCGAGCT-GATGACTCGCGCTTACGAGGCATT-CCTCGTTGAAGACTCATAATTGCAAT 10655 Query 86 GATCTAT 92 ||||||| Sbjct 10656 GATCTAT 10662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751949806350