Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5648 205 4e-50 seq4919 196 2e-47 seq439 104 1e-19 >seq5648 Length=1799 Score = 205 bits (226), Expect = 4e-50 Identities = 219/286 (77%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 402 AAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || || ||||||||| |||||||||| |||||| ||||| ||||||||| | ||| Sbjct 98 AATCGACCCGTCTTGAAACACGGACCGAGGAGTTCAACATGTATGCGAGTTGGCGAGTGG 157 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAACGGA--GGTGGGAACCCGTGAGGGTGCACCATC 519 |||| ||| ||| ||||| | | || ||||||| | || | ||||||||| Sbjct 158 AAAACTCGTAAGCG-----AAAGTAACCTGACTGGTGGGATGGCCTGTGCCTGCACCATC 212 Query 520 GACCGATCCTGATG--TCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577 |||||| | || || ||| || | || ||||||| ||||||| |||||| |||||||| Sbjct 213 GACCGACCATGTTGCTTCTGCGAAAGG-TTTGAGTGCGAGCATACCTGTTGAGACCCGAA 271 Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||||||||||| ||| ||||| |||||||||||||| |||||| || || Sbjct 272 AGATGGTGAACTATGCCTGAGCAGGTTGAAGTCAGAGGAAACTCTGATGGAGGGCCGTAG 331 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| ||||||||||| | | |||||||||||||||| Sbjct 332 ATGTGCTGACGTGCAAATCGCTTTCTTGACTTGGGTATAGGGGCGA 377 >seq4919 Length=2758 Score = 196 bits (216), Expect = 2e-47 Identities = 146/170 (86%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| |||||||||||||||||| |||| | |||||||||| ||||||| | Sbjct 2480 TTCCACGAGTCGGGTTGTTTGGGAATGCAGCCCTAATTTGGAGGTAAATCCCTTCTAAGG 2539 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 2540 CTAAATATTGCTGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 2599 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| |||||||||| ||||| | |||||||||||| ||||||||| ||| Sbjct 2600 TTGAAAAGAGAGTT-AAAAGTGCTTGAAATTGTTGAGAGGGAAGCGATTG 2648 >seq439 Length=62862 Score = 104 bits (114), Expect = 1e-19 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 388 GGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGC 447 |||| |||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 11221 GGCGAAATGTTTTCAATTGACCCGTCTTAAAACACAGACCAAGGAGTCTAACAACTATGC 11162 Query 448 GAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 |||| ||||||| ||| ||| ||||||||||| |||||| |||||| Sbjct 11161 GAGTACTTGGGTGGCAAGCCCAAATGCGTAATGAAAATGAACGTAGGTGG 11112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079852209500