Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq5307 241 3e-61 >seq5307 Length=2176 Score = 241 bits (266), Expect = 3e-61 Identities = 251/328 (77%), Gaps = 1/328 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1311 GAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTG 1252 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || ||| | ||| |||| || Sbjct 1251 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCCCGTAAAGTCTAATGTCAAATACC 1192 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAGAGGGGGGT 189 ||||| ||||| ||| ||||| | || |||| || |||| | ||||| | Sbjct 1191 AGGGCTCAACCTTGGACCGGCATTGGAGAACTCACGGGCTTGAGTACGGTAGAGGCAGAG 1132 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 ||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||| Sbjct 1131 GGAATTCCACGTGGAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGC 1072 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | ||||| | |||||| || | |||||||| |||||| || ||||||||| Sbjct 1071 GCTCTGCTGGGCCGAGACTGACACTGAGAGACGAAAGCTGGGGGAGTGAATAGGATTAGA 1012 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||| ||| ||| || ||||| || Sbjct 1011 TACCCTAGTAATCCCAGCTGTAAACTAT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289511146560