Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4712 143 4e-32 >seq4712 Length=3135 Score = 143 bits (158), Expect = 4e-32 Identities = 181/248 (73%), Gaps = 17/248 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || Sbjct 1895 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGG 1953 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| || Sbjct 1954 AGACCTGTGTTTTTGGTAAACAGTCGCCTGAGCCTGGTCACTGCGACC----------CA 2003 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | || || | | ||| |||||||| ||||||||||||||||| |||||||| Sbjct 2004 AGAAGTAAATC-----CTG-GGCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAG 2057 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||||| | || | |||| |||||||||||| | |||||||||||| Sbjct 2058 TTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGT 2117 Query 241 TTACGGTA 248 || |||| Sbjct 2118 TTCAGGTA 2125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694353650970