Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4712 268 2e-69 >seq4712 Length=3135 Score = 268 bits (296), Expect = 2e-69 Identities = 309/414 (75%), Gaps = 23/414 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCG-ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | || ||||||| ||| ||| |||||||||| ||||| Sbjct 1712 GCATCTTCACGGGACAAGTCTATTTCACCGAGCCTCTCTCTGAGACAGCGCTCAGATCGT 1771 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| Sbjct 1772 TACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGATCGTT 1831 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCA 190 || |||||| |||||||| |||||||||||| || |||||| | | | ||||| Sbjct 1832 ATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCCCTCAACGGTAACCAAC 1891 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | ||||||||||||||| |||||||||||| ||| ||| | ||| || ||||| Sbjct 1892 TTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACGACTTTGC 1951 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT 310 ||| |||||||||| ||||||||||| ||||||| || ||||| || || Sbjct 1952 GGAGACCTGTGTTTTTGGTAAACAGTCGCCTGAGCCTGGTCACTGCGACC--CAAGA--- 2006 Query 311 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 || || |||| ||||| |||||| |||||||||||| ||| ||| Sbjct 2007 -----AGTAAATCCT----------GGGCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTT 2051 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 ||| |||||||| |||||||||| || ||||||||||||||| |||||| Sbjct 2052 GCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTA-CCAACC 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260713130880