Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 331 3e-88
>seq5307
Length=2176
Score = 331 bits (366), Expect = 3e-88
Identities = 375/493 (76%), Gaps = 10/493 (2%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 915 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATTATGTGGAT 856
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAG 125
|||||||| ||||||||||||||||||||| ||||||| | |||| || |||
Sbjct 855 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGGACCTTTC-AGAA 797
Query 126 ATAG-AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184
|| | ||| | ||| |||| | || ||||||| ||||||| |||||||||||||
Sbjct 796 ATGGAAGGGTGCCCTAACGGGAGCTTGA-ACACAGGTGGTGCATGGCTGTCGTCAGCTCG 738
Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244
|| |||||| ||| ||||||||||| ||||||||||||||| ||||||| |
Sbjct 737 TGCCGTGAGGTGTATGGTTAAGTCCCATAACGAGCGCAACCCTCGTCTTTAGTTG--TTG 680
Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304
||| | | ||||| ||||||| ||| || | ||||||||||| ||| ||||
Sbjct 679 ATTTA--TCAATTCTCTAGAGAGACTGCCAGTG-TAAGCTGGAGGAAGGTGAGGATGACG 623
Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364
|||| ||| ||||||||||| |||||| ||||||| |||||||| ||||
Sbjct 622 TCAAGTCAGCATGCCCCTTACACCCTGGGCTTCACACGTAATACAATGGTTGGGACAATC 563
Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424
| ||||| |||||| | ||| ||| |||| |||||||||||||||||
Sbjct 562 AGAAGCGATCTCGCGAGAGCTAGCGGATCTGTTAAACCCAACCTCAGTTCGGATTGTAGG 503
Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483
|||||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||
Sbjct 502 CTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGT 443
Query 484 GAATACGTTCCCG 496
|||||||||||||
Sbjct 442 GAATACGTTCCCG 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503896374400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |