Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4919 306 6e-81 seq1070 107 3e-21 seq1480 100 5e-19 >seq4919 Length=2758 Score = 306 bits (338), Expect = 6e-81 Identities = 218/247 (88%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1275 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCC 1216 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC-CACCAACCATAG 132 ||| ||||||||||||| | ||||||||||||||||||||| | || |||| || Sbjct 1215 TCATACTTCCATTGGCTAAACGCCAATAGTCCCTCTAAGAAGTCGGCGCACCG--CAGGT 1158 Query 133 TCGATGGGG-CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 ||||| | |||||||||||| | ||||||||||||||| |||||| |||| ||||| Sbjct 1157 GCGATGCTGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGG 1098 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1097 CAACCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCA 1038 Query 252 ATCTGTC 258 ||||||| Sbjct 1037 ATCTGTC 1031 >seq1070 Length=34300 Score = 107 bits (118), Expect = 3e-21 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 |||| ||||||||||||||||||||||| |||||| ||||||||||||| | ||||||| Sbjct 21127 ACATTTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAACGCCAATA 21068 Query 102 GTCCCTCTAAGAAGCCAGC-CACC 124 |||||||||||||| | || |||| Sbjct 21067 GTCCCTCTAAGAAGTCGGCGCACC 21044 >seq1480 Length=25585 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 21900 CCACCAACTAAGAAAGGCCATGCACCACCACCCATAGATTCAAGAAAGAGCTCTCAATCT 21959 Query 256 GTC 258 ||| Sbjct 21960 GTC 21962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796746816090