Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq4919 306 6e-81
seq1070 107 3e-21
seq1480 100 5e-19
>seq4919
Length=2758
Score = 306 bits (338), Expect = 6e-81
Identities = 218/247 (88%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1275 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCC 1216
Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC-CACCAACCATAG 132
||| ||||||||||||| | ||||||||||||||||||||| | || |||| ||
Sbjct 1215 TCATACTTCCATTGGCTAAACGCCAATAGTCCCTCTAAGAAGTCGGCGCACCG--CAGGT 1158
Query 133 TCGATGGGG-CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191
||||| | |||||||||||| | ||||||||||||||| |||||| |||| |||||
Sbjct 1157 GCGATGCTGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGG 1098
Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1097 CAACCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCA 1038
Query 252 ATCTGTC 258
|||||||
Sbjct 1037 ATCTGTC 1031
>seq1070
Length=34300
Score = 107 bits (118), Expect = 3e-21
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101
|||| ||||||||||||||||||||||| |||||| ||||||||||||| | |||||||
Sbjct 21127 ACATTTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAACGCCAATA 21068
Query 102 GTCCCTCTAAGAAGCCAGC-CACC 124
|||||||||||||| | || ||||
Sbjct 21067 GTCCCTCTAAGAAGTCGGCGCACC 21044
>seq1480
Length=25585
Score = 100 bits (110), Expect = 5e-19
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 21900 CCACCAACTAAGAAAGGCCATGCACCACCACCCATAGATTCAAGAAAGAGCTCTCAATCT 21959
Query 256 GTC 258
|||
Sbjct 21960 GTC 21962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796746816090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |