Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 223 7e-56
>seq5307
Length=2176
Score = 223 bits (246), Expect = 7e-56
Identities = 253/336 (75%), Gaps = 15/336 (4%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||| |||| ||||||| | | |||||||||||| || ||||||||||||||||
Sbjct 1350 TTTACGATCCACGGACCTTCGTCCTG-CACGCGGCATTG-CTTCATCAGGCTTTCGCCCA 1407
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||| || ||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1408 TTGTGAAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1467
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180
||| ||||||||||||||||||||| ||| |||||| ||||||| ||| ||| || ||
Sbjct 1468 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAGGCCGTTACCCCCA 1527
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|||||||||||||| ||| | || | ||| || | | | | |||
Sbjct 1528 CCAACTAGCTAATCAGACGCAAGCCCCTCT-----------ACCGGCGGTTATTCACCTT 1576
Query 241 TCTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
|| | || || |||| ||||||||| | |||||| | |||||||||| | |
Sbjct 1577 TCACTCCTCAGCTATTATGGGGTATTAGCAACAGTTTCCCGATGTTATCCCCCTCCGATA 1636
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| || ||| || || |||| ||||||| |||| ||
Sbjct 1637 GGTAGGTTCTTACGCGTTACGCACCCGTGCGCCACT 1672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071926139200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |