Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq5307 223 7e-56 >seq5307 Length=2176 Score = 223 bits (246), Expect = 7e-56 Identities = 253/336 (75%), Gaps = 15/336 (4%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| |||| ||||||| | | |||||||||||| || |||||||||||||||| Sbjct 1350 TTTACGATCCACGGACCTTCGTCCTG-CACGCGGCATTG-CTTCATCAGGCTTTCGCCCA 1407 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1408 TTGTGAAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1467 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180 ||| ||||||||||||||||||||| ||| |||||| ||||||| ||| ||| || || Sbjct 1468 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAGGCCGTTACCCCCA 1527 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| | || | ||| || | | | | ||| Sbjct 1528 CCAACTAGCTAATCAGACGCAAGCCCCTCT-----------ACCGGCGGTTATTCACCTT 1576 Query 241 TCTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || | || || |||| ||||||||| | |||||| | |||||||||| | | Sbjct 1577 TCACTCCTCAGCTATTATGGGGTATTAGCAACAGTTTCCCGATGTTATCCCCCTCCGATA 1636 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || ||| || || |||| ||||||| |||| || Sbjct 1637 GGTAGGTTCTTACGCGTTACGCACCCGTGCGCCACT 1672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071926139200