Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq6283 154 5e-35 seq4712 140 1e-30 seq4919 75.2 4e-11 >seq6283 Length=1328 Score = 154 bits (170), Expect = 5e-35 Identities = 162/212 (76%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 388 AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAG 447 || |||| |||||||||||||| |||||||| ||||| | | || ||| | Sbjct 24 AAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACAAG---CATA-------CTT--G 71 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507 |||| || | |||| ||| | ||||||| || ||||||||||||| || |||| ||| Sbjct 72 CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCTAACAAGGGTTCTT 131 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 |||||||||||||| |||||| | ||||||||||||| |||||||||||| |||| Sbjct 132 TTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGTATTTAGCCTTACG 191 Query 568 GGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| | |||||||||| |||||| Sbjct 192 AGGTGGTCCTCGCTGATTCACACGGGATTTCA 223 >seq4712 Length=3135 Score = 140 bits (154), Expect = 1e-30 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | |||| |||||| |||| Sbjct 2902 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGAATTTCT 2961 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| || ||| ||||| | | |||||||| | || ||||||| ||||||| || Sbjct 2962 CCGCTAACCGCAGCTCATCTGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 3021 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| |||||| |||| ||| || |||||||| | |||||||| | | Sbjct 3022 TGTTACCCAAGCTTCATCCTGGCCACGGTTAGATCACCCGGGTTCGGGTCCATAAGAAGT 3081 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 ||| || ||||||||| |||| ||||||||| |||| Sbjct 3082 GACT-GTA-GCCCTATTCAGACTTGCTTTCGCTTAGGCT 3118 >seq4919 Length=2758 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || | ||||||| Sbjct 2598 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAATATTTAGC 2539 Query 562 CTTA 565 |||| Sbjct 2538 CTTA 2535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817474767360