Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq6283 154 5e-35
seq4712 140 1e-30
seq4919 75.2 4e-11
>seq6283
Length=1328
Score = 154 bits (170), Expect = 5e-35
Identities = 162/212 (76%), Gaps = 12/212 (6%)
Strand=Plus/Plus
Query 388 AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAG 447
|| |||| |||||||||||||| |||||||| ||||| | | || ||| |
Sbjct 24 AAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACAAG---CATA-------CTT--G 71
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507
|||| || | |||| ||| | ||||||| || ||||||||||||| || |||| |||
Sbjct 72 CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCTAACAAGGGTTCTT 131
Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567
|||||||||||||| |||||| | ||||||||||||| |||||||||||| ||||
Sbjct 132 TTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGTATTTAGCCTTACG 191
Query 568 GGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||||| | |||||||||| ||||||
Sbjct 192 AGGTGGTCCTCGCTGATTCACACGGGATTTCA 223
>seq4712
Length=3135
Score = 140 bits (154), Expect = 1e-30
Identities = 164/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195
|||||| ||| || |||||||||||||| ||||||| | | |||| |||||| ||||
Sbjct 2902 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGAATTTCT 2961
Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255
|| ||| || ||| ||||| | | |||||||| | || ||||||| ||||||| ||
Sbjct 2962 CCGCTAACCGCAGCTCATCTGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 3021
Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315
| |||||| |||||| |||| ||| || |||||||| | |||||||| | |
Sbjct 3022 TGTTACCCAAGCTTCATCCTGGCCACGGTTAGATCACCCGGGTTCGGGTCCATAAGAAGT 3081
Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354
||| || ||||||||| |||| ||||||||| ||||
Sbjct 3082 GACT-GTA-GCCCTATTCAGACTTGCTTTCGCTTAGGCT 3118
>seq4919
Length=2758
Score = 75.2 bits (82), Expect = 4e-11
Identities = 55/64 (86%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561
|| ||||||| |||||||||||||||||||| ||||||||||| | || | |||||||
Sbjct 2598 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAATATTTAGC 2539
Query 562 CTTA 565
||||
Sbjct 2538 CTTA 2535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817474767360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |