Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq6283 172 1e-40 seq4919 78.8 2e-12 >seq6283 Length=1328 Score = 172 bits (190), Expect = 1e-40 Identities = 183/235 (78%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| ||||||||| | | |||| | ||| ||| |||| ||||| | || | | Sbjct 11 TGCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACA-AGCATACT 69 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 | |||||||||||||| ||||||||||||| | |||||||||||||| | | |||| Sbjct 70 TG-CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCC-TAACAAGGGT 127 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| |||||||||| ||||||| ||| |||||||||| |||| |||||||||||| Sbjct 128 TCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGTATTTAGCCT 187 Query 367 T-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | |||| |||||| | | ||||| || |||| |||| || | ||||||| Sbjct 188 TACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGTCCCATGCTACTCG 241 >seq4919 Length=2758 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| | |||||||| Sbjct 2598 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAATATTTAGC 2539 Query 365 CTTGGA 370 ||| || Sbjct 2538 CTTAGA 2533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241514453760