Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq5307 214 4e-53 >seq5307 Length=2176 Score = 214 bits (236), Expect = 4e-53 Identities = 231/306 (75%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||||| || || || |||||||||||||||||| Sbjct 1381 GGCATTGCTTCATCAGGCTTTCGCCCATTGTGAAAAATTCCTCACTGCTGCCTCCCGTAG 1440 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 1441 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1500 Query 121 CGTCGGCTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179 ||| | ||||| ||| ||| | ||||||||| |||||| | ||| ||||| ||| | Sbjct 1501 CGTGGCCTTGGGAGGCCGTTACCCCCACCAACTAGCTAATCAGACGCAAGCCCCTCTACC 1560 Query 180 AGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 ||| | | || | | | ||||| | |||||| ||||||||| Sbjct 1561 GGCGGTTATTC------------ACCTTTCACTCCTCAGCTATTATGGGGTATTAGCAAC 1608 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||| | ||||| || ||| || ||| ||||| || ||| ||||| ||||||| || Sbjct 1609 AGTTTCCCGATGTTATCCCCCTCCGATAGGTAGGTT-CTTACGCGTTACGCACCCGTGCG 1667 Query 300 CCACTA 305 |||||| Sbjct 1668 CCACTA 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998331210240