Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq5307 205 2e-50 >seq5307 Length=2176 Score = 205 bits (226), Expect = 2e-50 Identities = 219/284 (77%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||| |||||| | | |||||| |||||||||||||||||| Sbjct 1030 CCCA-GCTTTCGTCTCTCAGTGTCAGTCTCGGCCCAGCAGAGCGCCTTCGCCACTGGTGT 1088 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||| ||| |||||||| ||||||| | | || Sbjct 1089 TCCTCCACATCTCTACGCATTTCACCGCTCCACGTGGAATTCCCTCTGCCTCTACCGTAC 1148 Query 121 TCAAGAAAAACAGTT-TCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGA 178 ||||| |||| || ||||| || |||||||||| | || ||| |||| || Sbjct 1149 TCAAGCCCGTGAGTTCTCCAATGCCGGTCCAAGGTTGAGCCC-TGGTATTTGACATTAGA 1207 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | || |||||| | |||||| |||||| | |||||| ||||||||| ||| Sbjct 1208 CTTTACGGGCCACCTACAGACGCTTTACGCCCAATCATTCCGGACAACGCTTGCACCCTC 1267 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| |||||||| Sbjct 1268 TGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828744680190