Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4712 123 4e-26 >seq4712 Length=3135 Score = 123 bits (136), Expect = 4e-26 Identities = 83/93 (89%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||| |||||||||||| ||| || ||||||||||||||||||||||||||| |||||| Sbjct 1154 ACGTTTTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTCGGACCT 1213 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||| || |||||| || |||||||||||| Sbjct 1214 ACTACAGACCGAGGATGTGATGAGCCGACATCG 1246 Score = 96.9 bits (106), Expect = 5e-18 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| ||||||||| |||||| ||||| | ||| | ||||| |||||| | | Sbjct 23 GCTTCCTACTTAGATGCTTTCAGCAGTTATCTAT-CCATGCGTAGCTACCCAGCGTTTCC 81 Query 69 C-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | | ||||||| ||| | || ||||| | | ||||||||||||||| | | Sbjct 82 CATTGGAATGAGAACTGGTACACAATTGGCATGTCCTTTCAGGTCCTCTCGTACTATGAA 141 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 ||| ||||||| || ||||| || |||||| ||||| ||||||||| || Sbjct 142 AGGCTACTCTCAATGCTCTAACGCCTACACCGGATATGGACCAAACTGTCTCACG 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780747884040