Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 241 3e-61
>seq5307
Length=2176
Score = 241 bits (266), Expect = 3e-61
Identities = 296/399 (74%), Gaps = 28/399 (7%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||| || | |||||||||| ||| |||||||||| ||||||||||| || ||||| ||
Sbjct 1365 CCTTCGTCCTGCACGCGGCATTGCTTCATCAGGCTTTCGCCCATTGTGAAAAATTCCTCA 1424
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 1425 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 1484
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA 198
||||||||||| |||||| |||| || |||| ||| |||| |||||||||||||| |
Sbjct 1485 CAGACCAGCTACTGATCGTGGCCTTGGGAGGCCGTTACCCCCACCAACTAGCTAATCAGA 1544
Query 199 TCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG---TCCCCCTCTTTGGTCTTGCGACGT 255
| | || || ||| || | | ||| || || | | |
Sbjct 1545 CGCAAGCCCCTC---TA---------CCGGCGGTTATTCACCT-TTCACTCCTCAGCTAT 1591
Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315
|||| ||||||||| || |||||| | ||||||||||||| ||| || ||| | |
Sbjct 1592 TATGGGGTATTAGCAACAGTTTCCCGATGTTATCCCCCTCCGATAGGTAGGTTCTTACGC 1651
Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375
|||| ||||||| ||||||| || || ||| | || | | |||||||
Sbjct 1652 GTTACGCACCCGTGCGCCACT--ACACATAA-----AAGAT--TT--TATGCGCGTTCGA 1700
Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||| || |||||||||||||| |||||
Sbjct 1701 CTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTCCTGAG 1739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222315776640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |