Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq5307 241 3e-61 >seq5307 Length=2176 Score = 241 bits (266), Expect = 3e-61 Identities = 296/399 (74%), Gaps = 28/399 (7%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||| || | |||||||||| ||| |||||||||| ||||||||||| || ||||| || Sbjct 1365 CCTTCGTCCTGCACGCGGCATTGCTTCATCAGGCTTTCGCCCATTGTGAAAAATTCCTCA 1424 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 1425 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 1484 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA 198 ||||||||||| |||||| |||| || |||| ||| |||| |||||||||||||| | Sbjct 1485 CAGACCAGCTACTGATCGTGGCCTTGGGAGGCCGTTACCCCCACCAACTAGCTAATCAGA 1544 Query 199 TCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG---TCCCCCTCTTTGGTCTTGCGACGT 255 | | || || ||| || | | ||| || || | | | Sbjct 1545 CGCAAGCCCCTC---TA---------CCGGCGGTTATTCACCT-TTCACTCCTCAGCTAT 1591 Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||| ||||||||| || |||||| | ||||||||||||| ||| || ||| | | Sbjct 1592 TATGGGGTATTAGCAACAGTTTCCCGATGTTATCCCCCTCCGATAGGTAGGTTCTTACGC 1651 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 |||| ||||||| ||||||| || || ||| | || | | ||||||| Sbjct 1652 GTTACGCACCCGTGCGCCACT--ACACATAA-----AAGAT--TT--TATGCGCGTTCGA 1700 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||| || |||||||||||||| ||||| Sbjct 1701 CTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTCCTGAG 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222315776640