Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq5307 304 4e-80 >seq5307 Length=2176 Score = 304 bits (336), Expect = 4e-80 Identities = 272/334 (81%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||||||| | ||||||| |||||||||||| | Sbjct 1547 GCGTCTGATTAGCTAGTTGGTGGGGGTAACGGCCTCCCAAGGCCACGATCAGTAGCTGGT 1488 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 1487 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 1428 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || |||||||||| ||||||||||| ||||| |||||||| || || Sbjct 1427 CAGTGAGGAATTTTTCACAATGGGCGAAAGCCTGATGAAGCAATGCCGCGTGCAGGACGA 1368 Query 340 AGGCCTTCGGGTCGTAAA--GCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 ||| | || ||||||| ||| | | || | ||||| |||||||||| | || Sbjct 1367 AGGTCCGTGGATCGTAAACTGCT-TTTGCT-AGAGAAGAACAAATGACGGTATCTAGCGA 1310 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| || Sbjct 1309 ATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTC 1250 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||| | | |||||||||| || |||||||| Sbjct 1249 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGG 1217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497496815360