Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq5307 304 4e-80
>seq5307
Length=2176
Score = 304 bits (336), Expect = 4e-80
Identities = 272/334 (81%), Gaps = 8/334 (2%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||||||||||||||||||||| || ||||||| | ||||||| |||||||||||| |
Sbjct 1547 GCGTCTGATTAGCTAGTTGGTGGGGGTAACGGCCTCCCAAGGCCACGATCAGTAGCTGGT 1488
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
|||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 1487 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 1428
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||| ||||| || |||||||||| ||||||||||| ||||| |||||||| || ||
Sbjct 1427 CAGTGAGGAATTTTTCACAATGGGCGAAAGCCTGATGAAGCAATGCCGCGTGCAGGACGA 1368
Query 340 AGGCCTTCGGGTCGTAAA--GCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395
||| | || ||||||| ||| | | || | ||||| |||||||||| | ||
Sbjct 1367 AGGTCCGTGGATCGTAAACTGCT-TTTGCT-AGAGAAGAACAAATGACGGTATCTAGCGA 1310
Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455
|||| |||||||||| |||||||||||||||||||||| |||| || |||||| ||
Sbjct 1309 ATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTC 1250
Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489
|||||| | | |||||||||| || ||||||||
Sbjct 1249 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGG 1217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497496815360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |