Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq5307 269 6e-70 >seq5307 Length=2176 Score = 269 bits (298), Expect = 6e-70 Identities = 299/397 (75%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| |||| Sbjct 1307 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTCCG 1248 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| | ||||| | || ||| | | || Sbjct 1247 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCCCGTAAAGTCTAATGTCAAATACCAGGG 1188 Query 133 CTCAACCCCGGGACTGCTTTTGA-AACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||||| || | || || || |||| ||||| |||| | | || |||| |||| Sbjct 1187 CTCAACCTTGGACCGGCATTGGAGAACTCACGGGCTTGAGTACGGTAGAGGCAGAGGGAA 1128 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 |||| ||| |||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1127 TTCCACGTGGAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGCTC 1068 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| |||||| || ||||||||||||| Sbjct 1067 TGCTGGGCCGAGACTGACACTGAGAGACGAAAGCTGGGGGAGTGAATAGGATTAGATACC 1008 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTG 371 || ||| ||| || |||||| ||| | |||| || || | | | | || || Sbjct 1007 CTAGTAATCCCAGCTGTAAACTATGGAGACTAAGT----GGTCCCTTTGGGGC-----TG 957 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| ||||| ||||| | || ||||||||||| Sbjct 956 CTGTAGCTAACGCGTTAAGTCTCCCGCCTGGGGAGTA 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203117099520