Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq4919 342 1e-91
seq1070 102 2e-19
seq2426 86.0 1e-14
>seq4919
Length=2758
Score = 342 bits (378), Expect = 1e-91
Identities = 264/310 (85%), Gaps = 4/310 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| |||||||| | |||||||||||| ||| ||| |||| ||||| ||||||||
Sbjct 1122 GAACGAGACCTCAGCCTGCTAAATAGTCAGCATCGCACCTGCGGTGCGCCGACTTCTTAG 1181
Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| ||| | |||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 1182 AGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGATAACAGGTCTGTGATGCCCTT 1241
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1242 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGCGATCAACGAGCCTATC--CTTGGCC 1299
Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258
| ||| | |||||||||||| || | | |||||| |||||||||| ||||||||||||
Sbjct 1300 GAGAGGCCCGGGTAATCTTGTAAACCGC-GTCGTGATGGGGATAGATTATTGCAATTATT 1358
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1359 AGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCT 1418
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 1419 GCCCTTTGTA 1428
>seq1070
Length=34300
Score = 102 bits (112), Expect = 2e-19
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 60 GCGGGTCGCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAAT 118
|||| ||||| ||||||||||||||||| ||| | |||| |||||||| |||||| ||
Sbjct 21042 GCGGTGCGCCGACTTCTTAGAGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGAT 21101
Query 119 AACAGGTCTGTGATGCCCTTAGATGT 144
||||||||||||||||||||| ||||
Sbjct 21102 AACAGGTCTGTGATGCCCTTAAATGT 21127
>seq2426
Length=13171
Score = 86.0 bits (94), Expect = 1e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 240 ATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299
||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 10662 ATAGATCATTGCAATTATGAGTCTTCAACGAGGAATGCCTCGTAAGCGCGAGTCATCAGC 10603
Query 300 ACGCG 304
||||
Sbjct 10602 TCGCG 10598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947134737920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |