Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4919 342 1e-91 seq1070 102 2e-19 seq2426 86.0 1e-14 >seq4919 Length=2758 Score = 342 bits (378), Expect = 1e-91 Identities = 264/310 (85%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||| | |||||||||||| ||| ||| |||| ||||| |||||||| Sbjct 1122 GAACGAGACCTCAGCCTGCTAAATAGTCAGCATCGCACCTGCGGTGCGCCGACTTCTTAG 1181 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | |||| |||||||| |||||| |||||||||||||||||||||| Sbjct 1182 AGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGATAACAGGTCTGTGATGCCCTT 1241 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 1242 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGCGATCAACGAGCCTATC--CTTGGCC 1299 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||| | |||||||||||| || | | |||||| |||||||||| |||||||||||| Sbjct 1300 GAGAGGCCCGGGTAATCTTGTAAACCGC-GTCGTGATGGGGATAGATTATTGCAATTATT 1358 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1359 AGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCT 1418 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 1419 GCCCTTTGTA 1428 >seq1070 Length=34300 Score = 102 bits (112), Expect = 2e-19 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 60 GCGGGTCGCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAAT 118 |||| ||||| ||||||||||||||||| ||| | |||| |||||||| |||||| || Sbjct 21042 GCGGTGCGCCGACTTCTTAGAGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGAT 21101 Query 119 AACAGGTCTGTGATGCCCTTAGATGT 144 ||||||||||||||||||||| |||| Sbjct 21102 AACAGGTCTGTGATGCCCTTAAATGT 21127 >seq2426 Length=13171 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 240 ATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 ||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||| Sbjct 10662 ATAGATCATTGCAATTATGAGTCTTCAACGAGGAATGCCTCGTAAGCGCGAGTCATCAGC 10603 Query 300 ACGCG 304 |||| Sbjct 10602 TCGCG 10598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947134737920