Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq4712 205 3e-50
>seq4712
Length=3135
Score = 205 bits (226), Expect = 3e-50
Identities = 394/567 (69%), Gaps = 18/567 (3%)
Strand=Plus/Minus
Query 4 AGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGC 63
|||| ||| ||||| |||||| || | | |||||||| || |||||||| || ||||
Sbjct 3102 AGTCTGAATAGGGCTACAGTCACTTCTTATGGACCCGAACCCGGGTGATCTAACCGTGGC 3043
Query 64 CAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAG 123
|||||||||| | |||||||| |||||||||||||| || |||||||||||| |
Sbjct 3042 CAGGATGAAGCTTGGGTAACACCAAGTGGAGGTCCGAACCGACCGATGTTGAAAAATCGG 2983
Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183
||||||||| || ||| || |||| | || | |||| ||| ||||||| |||| ||
Sbjct 2982 CAGATGAGCTGCGGTTAGCGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATCTCCCC 2923
Query 184 GAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGTTATGG 240
|||| || ||| || || || || ||| |||||| ||| |||||| | |
Sbjct 2922 GAAATGCGTTGAGGCGCAGCGGTAACGATGAACGATCTTGGGGTAAAGCGACTGTT-TCG 2864
Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAGTTTTAC 299
| ||| | | | |||||| | | |||||||| |||| | || ||||| |
Sbjct 2863 ATGCGGGCTGCGAGAGTGGTACCAAGTCGTGGCAAACTCAGAATACAAGATATGTTTT-C 2805
Query 300 CG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGT-GCCCGAGAGGAGAAGAATCCGGAC 356
|| |||||| |||| | |||| | | | | ||||| || | || |||
Sbjct 2804 CGTAAACCAGTGAGACAGTGGGGGATAAGCTTCATATGTCAAGAGGGAAACAGCCCAGAC 2745
Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416
| ||||||||||||| ||||| |||||| || || || || || |||| | ||
Sbjct 2744 CACCAGCTAAGGCCCCTAAATGGTCACTAAGTGGAA--AAGGATGTGAGAATGCTGAAAC 2687
Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476
| | |||| ||| |||| |||||||| | || || ||||||||||||| |||||||| ||
Sbjct 2686 AACCAGGAAGTTCGCTTAGAAGCAGCTA-TCCTTAAAAGAGTGCGTAATAGCTCACTGGT 2628
Query 477 CGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536
|| || ||| |||||| |||| | ||||| || ||||||| |||| ||
Sbjct 2627 AAAGCGTTCTTGCGCCGATAATGGCCGGG-ACTAAGTGACCTGCCGAAGCTGTGGTATAT 2569
Query 537 TTTAT-----ATGATCGGTAGGGGAGC 558
||||| || || |||||||||||
Sbjct 2568 TTTATTATAAATTATAGGTAGGGGAGC 2542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689483586560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |