Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4712 205 3e-50 >seq4712 Length=3135 Score = 205 bits (226), Expect = 3e-50 Identities = 394/567 (69%), Gaps = 18/567 (3%) Strand=Plus/Minus Query 4 AGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGC 63 |||| ||| ||||| |||||| || | | |||||||| || |||||||| || |||| Sbjct 3102 AGTCTGAATAGGGCTACAGTCACTTCTTATGGACCCGAACCCGGGTGATCTAACCGTGGC 3043 Query 64 CAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAG 123 |||||||||| | |||||||| |||||||||||||| || |||||||||||| | Sbjct 3042 CAGGATGAAGCTTGGGTAACACCAAGTGGAGGTCCGAACCGACCGATGTTGAAAAATCGG 2983 Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 ||||||||| || ||| || |||| | || | |||| ||| ||||||| |||| || Sbjct 2982 CAGATGAGCTGCGGTTAGCGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATCTCCCC 2923 Query 184 GAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGTTATGG 240 |||| || ||| || || || || ||| |||||| ||| |||||| | | Sbjct 2922 GAAATGCGTTGAGGCGCAGCGGTAACGATGAACGATCTTGGGGTAAAGCGACTGTT-TCG 2864 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAGTTTTAC 299 | ||| | | | |||||| | | |||||||| |||| | || ||||| | Sbjct 2863 ATGCGGGCTGCGAGAGTGGTACCAAGTCGTGGCAAACTCAGAATACAAGATATGTTTT-C 2805 Query 300 CG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGT-GCCCGAGAGGAGAAGAATCCGGAC 356 || |||||| |||| | |||| | | | | ||||| || | || ||| Sbjct 2804 CGTAAACCAGTGAGACAGTGGGGGATAAGCTTCATATGTCAAGAGGGAAACAGCCCAGAC 2745 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | ||||||||||||| ||||| |||||| || || || || || |||| | || Sbjct 2744 CACCAGCTAAGGCCCCTAAATGGTCACTAAGTGGAA--AAGGATGTGAGAATGCTGAAAC 2687 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| ||| |||| |||||||| | || || ||||||||||||| |||||||| || Sbjct 2686 AACCAGGAAGTTCGCTTAGAAGCAGCTA-TCCTTAAAAGAGTGCGTAATAGCTCACTGGT 2628 Query 477 CGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536 || || ||| |||||| |||| | ||||| || ||||||| |||| || Sbjct 2627 AAAGCGTTCTTGCGCCGATAATGGCCGGG-ACTAAGTGACCTGCCGAAGCTGTGGTATAT 2569 Query 537 TTTAT-----ATGATCGGTAGGGGAGC 558 ||||| || || ||||||||||| Sbjct 2568 TTTATTATAAATTATAGGTAGGGGAGC 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689483586560