Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4712 233 7e-59 >seq4712 Length=3135 Score = 233 bits (258), Expect = 7e-59 Identities = 400/565 (71%), Gaps = 29/565 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| ||||||||| |||||| || Sbjct 1381 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCAATGTCTGATTTCC 1440 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||||| | ||||||| Sbjct 1441 GTCCAGACTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGAGGT-ATTCGCCCCAA 1499 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 |||||| |||||| | |||||| || ||| || || | |||| || | Sbjct 1500 ATAAACTGCCCACCTGAAACTGTCAAGGGTCCTGATTCAAGGATCCCCATTAGGATTCTA 1559 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCG-----CAT 234 | ||||||||| | ||| | | ||||| |||| | || | | | Sbjct 1560 GCTCTTCCAGAGTGGTCTCTCACTGATGGCTCCA-----ACTACCCCGGAAGGTAATCTT 1614 Query 235 CATAGTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTG 292 || | |||||||||| || | ||| | || ||||| ||||| ||||| || ||| Sbjct 1615 CAACGCCTCCCACCTAGGCTGCGCAAGAAAAGC-CCGAAC-CCAATTCCAAGATACAGTC 1672 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG-CA 350 ||| | | |||||||| |||| | | | | ||||||| || | | | Sbjct 1673 AAGCTTCATAGGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACGGGACAAGTCT 1732 Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||||| | || |||||||||| ||||||||||||| Sbjct 1733 ATTTCACCGAGCCTCTCTCTGAGACAGC-GCTCAGATCGTTACGCCTTTCGTGCAGGTCG 1791 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||| | Sbjct 1792 AAACTTACTCGACAATGAATTTCGCTACCTTAGGATCGTTATAGTTACGACCGCCGTTCA 1851 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 | |||||||| | | || || | || ||| || || | | | |||||||| Sbjct 1852 CCGGGGCTTCGGTCGTCAGCTTCCCTCA--ACG----GTAACCA--ACTTC-CTTAACCT 1902 Query 530 TCCAGCACCGGGCAGGCGTCAGTCC 554 ||| |||| ||||||||||||| || Sbjct 1903 TCCGGCACTGGGCAGGCGTCAGCCC 1927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702282704640