Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq5307 163 6e-38 >seq5307 Length=2176 Score = 163 bits (180), Expect = 6e-38 Identities = 215/296 (73%), Gaps = 19/296 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | || |||| ||| Sbjct 1279 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC----GCTAGATAC-----------CGT 1323 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | || ||| || ||||| ||||||| |||| || ||||| |||| ||||| Sbjct 1324 C--ATTTGTTCTTCTCTAGCAAAAGCAGTTTACGATCCACGGA-CCTTCGTCCTGCACGC 1380 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 1381 GGCATTGCTTCATCAGGCTTTCGCCCATTGTGAAAAATTCCTCACTGCTGCCTCCCGTAG 1440 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 1441 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 1500 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || || |||||||| |||| || |||| ||||| ||||| ||| || Sbjct 1501 CGTGGCCTTGGGAGGCCGTTACCCCCACCAACTAGCTAATCAGACGCAAGCCCCTC 1556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068726359680