Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4919 390 3e-106 seq5683 275 2e-71 >seq4919 Length=2758 Score = 390 bits (432), Expect = 3e-106 Identities = 281/321 (88%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 319 GTACTCATTCCAATTACCAGACGCTAA-GCGCCCGGTATTGTTATTTATTGTCACTACCT 261 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 260 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATC 201 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||| Sbjct 200 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCATGGTA 141 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 140 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGTCGGCA 81 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTT 297 ||||||||| |||||||| ||||||| |||| ||||| | | | | || || | | Sbjct 80 CAAGGCCATACGATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCT 22 Query 298 GGTTTTTTATCTAATAAATAC 318 || ||||||||||||||||| Sbjct 21 GGCCTTTTATCTAATAAATAC 1 >seq5683 Length=1769 Score = 275 bits (304), Expect = 2e-71 Identities = 218/256 (85%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTTGGTTTTTTATCT 309 |||||| ||||||| |||| ||||| | | | | || || | ||| |||||||| Sbjct 1769 ATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCTGGCCTTTTATCT 1711 Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 ||||||||| ||||||| ||||||||| || | ||| ||||||||||||||||||| | Sbjct 1710 AATAAATACGACCCTTCCAGAAGTCGGG-TTGTGCGCACGTATTAGCTCTAGAATTACTA 1652 Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 ||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1651 CGGTTATCCGAGTAGTA-GGTACCATCAAATAAACTATAACTGATTTAATGAGCCATTCG 1593 Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1592 CAGTTTCACAGTATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 1533 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 1532 ATATGACTACTGGCAG 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510295933440