Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq4919 390 3e-106
seq5683 275 2e-71
>seq4919
Length=2758
Score = 390 bits (432), Expect = 3e-106
Identities = 281/321 (88%), Gaps = 5/321 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 319 GTACTCATTCCAATTACCAGACGCTAA-GCGCCCGGTATTGTTATTTATTGTCACTACCT 261
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 260 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATC 201
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||
Sbjct 200 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCATGGTA 141
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 140 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGTCGGCA 81
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTT 297
||||||||| |||||||| ||||||| |||| ||||| | | | | || || | |
Sbjct 80 CAAGGCCATACGATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCT 22
Query 298 GGTTTTTTATCTAATAAATAC 318
|| |||||||||||||||||
Sbjct 21 GGCCTTTTATCTAATAAATAC 1
>seq5683
Length=1769
Score = 275 bits (304), Expect = 2e-71
Identities = 218/256 (85%), Gaps = 7/256 (3%)
Strand=Plus/Minus
Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTTGGTTTTTTATCT 309
|||||| ||||||| |||| ||||| | | | | || || | ||| ||||||||
Sbjct 1769 ATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCTGGCCTTTTATCT 1711
Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368
||||||||| ||||||| ||||||||| || | ||| ||||||||||||||||||| |
Sbjct 1710 AATAAATACGACCCTTCCAGAAGTCGGG-TTGTGCGCACGTATTAGCTCTAGAATTACTA 1652
Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428
||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1651 CGGTTATCCGAGTAGTA-GGTACCATCAAATAAACTATAACTGATTTAATGAGCCATTCG 1593
Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488
||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CAGTTTCACAGTATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 1533
Query 489 ATATGACTACTGGCAG 504
||||||||||||||||
Sbjct 1532 ATATGACTACTGGCAG 1517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510295933440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |