Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq222 224 8e-54 seq32 136 3e-27 seq34 134 1e-26 >seq222 Length=84561 Score = 224 bits (248), Expect = 8e-54 Identities = 440/648 (68%), Gaps = 2/648 (0%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||| || || ||||||||||| || ||||||| || ||| ||||||| Sbjct 74375 GGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGG 74434 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || || ||||| |||||||||| || || || || |||||||| Sbjct 74435 ATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGG 74494 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| | ||||||||| | ||||||||| || || ||||| | || | || | |||| Sbjct 74495 TTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATG 74554 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATG 66240 || ||| || | || | ||| | | | ||| | || | ||| ||||| | Sbjct 74555 GCAAACCACAGCTGCTGGGCGCGGATCGT-CTTGCGCGCACGCCCCTCGCGCTCGTAGCG 74613 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 |||||| | || || || ||||| || | || | || || || || Sbjct 74614 CGTGTAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGTTGGG 74673 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 || | |||||||| || ||||| || || || |||| || || || | ||| Sbjct 74674 GCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCA 74733 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 | ||| ||| | || || || || |||||| | ||||| || ||||||| || Sbjct 74734 CATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCAGCTC 74793 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 || ||| ||||| ||||| || ||||| || |||||||| ||||| |||| ||| | || Sbjct 74794 GATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCG 74853 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 || ||||| || ||||| ||||| || || | ||| ||||| |||| ||| ||||| Sbjct 74854 CTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTAC 74913 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 || ||||| || |||| ||||||||| ||| ||| || || || || ||||| Sbjct 74914 GATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCGTG 74973 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATC 66648 || ||| || || ||||| || |||| || ||| | || || || Sbjct 74974 AATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTC 75021 >seq32 Length=161680 Score = 136 bits (150), Expect = 3e-27 Identities = 362/546 (66%), Gaps = 23/546 (4%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||||||| |||| ||||||||| | |||||| | ||| |||| | |||| | Sbjct 59940 TACAAAAAGGCCCAAGCCAGCTTCTGGACTGCCGAGGAGATTGATCTGTCACAGGACAAG 59881 Query 61159 AATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 ||| | ||| |||| || || || || | || || ||| | || ||| Sbjct 59880 TGGGACGAGCTGCGC------AGCGACGAGCAGCACTTTCTCAAGCACGTGCTCGCTTTC 59827 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA---CGTTTCGCGCAGGAG 61275 ||||| | || || || |||||||| ||||| | || | || ||| || ||| Sbjct 59826 TTTGCTACGTCTGATGGCATCGTCAACGAGAACCT---GGCATCGCGCTTCATGCGCGAG 59770 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 |||||| | | |||||||||||||| ||||| |||||||| || || ||||| |||||| Sbjct 59769 GTGCAACTCCCAGAGGCGCGTTGTTTTTACGGATTCCAGATCGCAATTGAGAACGTCCAC 59710 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 |||| |||| | || | || ||||||| ||| | | ||| ||| || Sbjct 59709 GGCGAGACGTACTCCCTGCTGTTGGACCACTACATCAAGGA--TGTC--CACGAGAAAGA 59654 Query 61396 TTGT-TCAAT---GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || || | ||||| ||||| || || |||| | || || ||||| || Sbjct 59653 CCGTCTCTTTCGCGCCATTGAGACAATGCCATGTGTGACCCAAAAGGCCACATGGGCGTT 59594 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 || ||||| | || | ||| | || | || ||| |||||||||| | ||| Sbjct 59593 GAAGTGGAT--CGAG-GCGTCGGATGTGTTCGCCAGGCGCTTGGTGGCATTTGCAGCGGT 59537 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| || || || ||| ||||| ||| | || ||||| || || Sbjct 59536 CGAGGGCATCTTTTTCTCGGGCTCATTCTGCGCCATCTTCTGGCTCAAAAAACGCGGGCT 59477 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || ||||| |||||| | || || || |||||||| | || || || Sbjct 59476 CATGCCGGGGCTCACCTTTTCAAATGAGCTCATCTCTCGGGACGAGGGTCTACACTGCGA 59417 Query 61632 TTTTGC 61637 ||||| Sbjct 59416 CTTTGC 59411 >seq34 Length=156822 Score = 134 bits (148), Expect = 1e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || ||||| ||| |||||||||| ||||| || || |||||| | Sbjct 81402 CATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCGCCTCCTCCTT 81461 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| || ||||||| || ||||| ||||| | ||| || ||||| || |||| ||| Sbjct 81462 GCCGTGGTTCTTGCGCAGCTCCAGGAAGTCAAACACGTCAGCGTGCCAGGGCTCCATGTA 81521 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 ||||||||| | |||| | || |||||||| || ||||| || |||| Sbjct 81522 GATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATAGC 81568 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||||| || ||||||||||| || ||| |||||||||| ||||| || Sbjct 80889 GGTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTG 80948 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||||| ||||| || |||||||||| |||||| || |||| ||||| || || Sbjct 80949 GTTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTG 81008 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 || ||| | ||||||| ||| || Sbjct 81009 GGCCTCCAGGATGGCGAACCACAG 81032 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482 |||| ||| ||||||||| ||||| || || || || ||||||||||| ||| ||| Sbjct 79606 TTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGC 79665 Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542 |||||| | || ||||||| || || ||| || || || |||||||| || ||| Sbjct 79666 TCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCCGTGGGCATGGGCGCCACC 79725 Query 65543 AACAATGAGTTTCGCAATCCGT 65564 | || ||||| |||| |||| Sbjct 79726 AGCAGCGAGTTGCGCACGCCGT 79747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534615469600