Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq556 104 1e-16 seq191 96.9 1e-14 seq921 93.3 2e-13 >seq556 Length=54819 Score = 104 bits (114), Expect = 1e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||||||||| ||| || | |||||||||||||||| |||||| | ||||| | || Sbjct 35319 GTCATGCGCGAGGGGAAGCCGTGCGGGTTCATGATGAGGTCGGGGCACACGCCGCGCTCG 35260 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||||| | ||||| | || | ||| ||||||||||||||||| || Sbjct 35259 CTGAAGGGGAAATCCTCCTGCCGCACGATGTTGCCCACCACGCCCTTCTGGCCGTGCCGA 35200 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGC 449152 |||| ||||||||| ||| |||||||| Sbjct 35199 CTGCTGAACTTGTCGCCCAGCTCGGGC 35173 >seq191 Length=90312 Score = 96.9 bits (106), Expect = 1e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 349065 TGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCG 349124 || ||| |||| || |||||||||| | ||||| ||||| ||||||||| || | Sbjct 6993 TGCGCGCCGCGTTGATGATCTCCTTGATGCGGGGCACTCCCAGCGTCACGTTCATGCTGG 6934 Query 349125 CGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACT 349184 | ||||| || |||||||| |||| ||| |||| ||||||| |||||||||||| ||| Sbjct 6933 CCACGCCCGCGAAGTGGAACGTCTTGAGCGTCATCTGCGTGCCCGGCTCGCCGATGGACT 6874 Query 349185 G 349185 | Sbjct 6873 G 6873 >seq921 Length=38590 Score = 93.3 bits (102), Expect = 2e-13 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGAC-TCCCTGTCGATGAA 222524 || |||||||||||||||||| || ||||||||| ||| |||| | || | | |||| Sbjct 21660 ATTATCCACCGCGACCTCAAGGCCGCGAACCTGCTCATGGACGACAACGCTATTG-TGAA 21718 Query 222525 GGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCCACCATGA-CACGGTG-- 222581 | || || ||||| | ||||| | | || |||| | | ||||| | ||| | Sbjct 21719 AATCGCGGATTTTGGCGTGGCGCGCGTAATCGAGACCACGGGCCACATGACCGCGGAGAC 21778 Query 222582 CGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGC 222641 |||||| ||||| ||| || ||| | || || ||| ||| ||||||||| Sbjct 21779 GGGCACGTATCGCTGGATGGCGCCGGAGGTGATTGAGCACAAGCCGTACGACGAGAAGGC 21838 Query 222642 CGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAG 222690 ||||||| |||||||||| || | |||||||| | ||||| ||||| Sbjct 21839 TGACGTCTTCTCGTTCGGCGTCGTGCTGTGGGAGCTGCTCACGTGCAAG 21887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084550674428220