Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq6015 774 0.0 seq3788 333 3e-86 >seq6015 Length=1491 Score = 774 bits (858), Expect = 0.0 Identities = 760/978 (78%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||| |||| || ||| | |||||| | || |||||||||||||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||| ||||| ||||||| ||| | |||||| |||| || ||||||| || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || |||||||| ||||| ||||| || || || ||||||| || | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||||||| | |||||||| |||| | || ||||| |||||| | ||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || | || || |||||| | |||||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCG 189209 | |||||||| | || | ||| |||||||||||||||||||||| | |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 189210 TCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGC 189269 | | ||||||||||| |||||| |||||||||| || || || || ||||| ||| Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 189270 AGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 189329 || || | || || || |||| |||||||| ||||| || | ||||| || ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 189330 CAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 189389 ||| || || ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 189390 CTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGG 189449 ||||||||| | || || || ||||| || ||||||||| | ||||| |||||||| || Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 189450 TTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGG 189509 |||| | ||||| || || | | |||||||| ||||||| ||| || ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 189510 TTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGG 189569 |||| ||||| |||||||||||||| ||||||||||| || ||||| || || ||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 189570 TCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGC 189629 |||| | ||||||||||| || || ||||||||||| |||||| | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 189630 TGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAA 189689 ||| |||||||| | ||||| ||||| || || | || | || ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 189690 CCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACAC 189749 ||| || || ||||||||||| ||||| || | || ||||||||||| | ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 189750 ATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGC 189809 ||||||||| | ||||||||||| | ||||||||||| ||||| ||||||||||| Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 189810 TCACAACTTCCCTCTTGA 189827 ||||||||||||||| || Sbjct 391 TCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 333 bits (368), Expect = 3e-86 Identities = 379/509 (74%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 190491 CTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCA 190550 || || || || || |||||||||||||| |||||||| ||||||||||||||||| || Sbjct 2749 CTATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCT 2690 Query 190551 GGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTG 190610 ||| | | || || || || | | || || || |||| |||||||| || || || Sbjct 2689 GGTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2630 Query 190611 TATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAG 190670 | ||||||||||| || |||||||| || ||| || ||||||| | ||||| Sbjct 2629 TTCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAA 2570 Query 190671 ACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGT 190730 || || || ||||| || || |||||||||||||| ||||| |||||||| || ||| | Sbjct 2569 ACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCT 2510 Query 190731 AATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCT 190790 || ||| | ||||| || ||||| ||||| || ||||| || | ||| || |||| | Sbjct 2509 AACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGT 2450 Query 190791 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAG 190850 | | ||| || ||||| | ||||| |||||||||||||||||||| ||||| ||||| Sbjct 2449 GCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAA 2390 Query 190851 ATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAAT 190910 ||| | || || ||||| || |||||||| ||||| || || ||||| || ||| | || Sbjct 2389 ATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAAC 2330 Query 190911 GAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCA 190970 |||||| | ||| | ||| |||| | || ||||| || || | | ||||| || Sbjct 2329 GAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCT 2270 Query 190971 GAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 ||||||||||| || | || |||||||| Sbjct 2269 GAAGAAGTATTACCGCGTGGTAACGCTCT 2241 Score = 223 bits (246), Expect = 4e-53 Identities = 355/509 (70%), Gaps = 8/509 (2%) Strand=Plus/Minus Query 189983 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTC 190042 ||||||||| | |||||||||||| | ||| || || || ||||| |||||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 190043 TGGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGAC 190102 || ||| | ||||| || |||||| | ||| | ||||| ||| | ||||| || || Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 190103 GTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTT 190162 || | ||| ||||| || || || | || | | |||| | || ||| ||| || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 190163 TCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 190222 | || || ||||| ||||| ||||| | ||||| || |||||||| | |||| Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 190223 GGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 190282 |||||| ||| ||||||| || ||| | ||| |||||||| || | ||||| || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 190283 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 190342 || || | ||||| ||||| | ||||||| || ||| | | ||||||||| | || Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 190343 ACGTCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 190398 ||| || ||| | ||||| || || |||||||| ||||| | || || ||| Sbjct 4143 TCGT----TCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTG 4088 Query 190399 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCAT 190458 | |||||| || || || || ||||| | |||||||| |||||||||| || || Sbjct 4087 TATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTA 4028 Query 190459 CCTTCGGTGTGGCAGCGATCTTCCGCTTC 190487 ||| ||||| || || |||||||| ||| Sbjct 4027 GCTTTGGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634025389860000