Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq148 255 2e-65 seq149 179 1e-42 >seq148 Length=122497 Score = 255 bits (282), Expect = 2e-65 Identities = 303/408 (74%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 48203 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 48262 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | ||| | ||| Sbjct 48263 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTCAAAAGTCTCCTGT 48322 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| | |||||||||| || ||| | ||| | ||||||| || || Sbjct 48323 CAAAGATCAGGGCTTAACCCTGGGCCGGCAGGAGAAACTCTGAGGCTAGAGTTTGGTAGG 48382 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||| ||| ||| |||||||||||||| || ||||||||||||| || Sbjct 48383 GGCAGAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAAAGG 48442 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| | |||||| || | ||||||||| |||||||||| | Sbjct 48443 CGAAAGCACTCTGCTGGGCCACAACTGACACTGAGAGACGAAAGCGAGGGGAGCAAAAGG 48502 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTAC 361 |||||||||||| ||||||| |||| |||||||| ||||| |||||| | ||| Sbjct 48503 GATTAGATACCCCTGTAGTCCTCGCCGTAAACGATGGATACTAGATGTTGGATAGGTTAA 48562 Query 362 TTCCTT-GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 | || ||| || |||||||||||||||| ||||||||||| || Sbjct 48563 AGCATTCAGTATCGGAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTA 48610 >seq149 Length=72121 Score = 179 bits (198), Expect = 1e-42 Identities = 241/330 (73%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || ||| ||||| || |||||||||||||||||||||||| || || ||||||| Sbjct 19473 AAAAAGTCCCGGCCAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCGAGCGTTAT 19532 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT-GA-AATCC 129 ||||||| | ||||||||||||| || |||||||| | || | | || |||| Sbjct 19533 TCGGAATGATTGGGCGTAAAGCGCACGTAGGCGGTTTAGAAAATCCAAAATCGAGAATCT 19592 Query 130 CCGGGCTTAACCTGG-GAATTGCATT-TGTGACTGCACGACTAGAGTGTGTCAGAGGGGG 187 | ||| || | | ||| | || ||||| | | |||| |||| || ||||| | Sbjct 19593 CAAAGCTCTACTTTGAGAAGTATTTTCTGTGATTCCTAGACTTGAGTAAGTAAGAGGAGA 19652 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 ||||||||| |||||| || ||||| || ||||| ||||||||||||| || ||| Sbjct 19653 ATGGAATTCCTGGTGTAGAGGTAAAATGTGTTGATATCAGGAGGAACACCAAAAGCAAAG 19712 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | |||| | ||||||| | | | ||| |||||||||| |||| |||||| Sbjct 19713 GCAATTCTCTGGTACTCTACTGACGTTGAGGTGCGACAGCGTGGGGATCAAAAGGGATTA 19772 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||||||||| | |||||| Sbjct 19773 GATACCCCTGTAGTCCACGCCGTCAACGAT 19802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289597936640