Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq148 149 9e-34 seq149 89.7 7e-16 >seq148 Length=122497 Score = 149 bits (164), Expect = 9e-34 Identities = 183/247 (74%), Gaps = 15/247 (6%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || ||| | | ||||| | ||| || Sbjct 51624 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTAC-GACTTTGCGGA 51566 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| ||||||||||| || || ||||||||| | || | || Sbjct 51565 GACCTGTGTTTTTGATAAACAGTCGCCAGGGCCTGGTCACTGCGACCA--AGCAATTTAA 51508 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 ||| || |||||||||||||||||||||||||||| ||||||||||| | Sbjct 51507 ------GTT-ACT-----TGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGT 51460 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || | ||||||||| |||||| ||||||||||||||| Sbjct 51459 TCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACTAACCCACCTGTGTCGGTT 51400 Query 242 TACGGTA 248 ||||||| Sbjct 51399 TACGGTA 51393 >seq149 Length=72121 Score = 89.7 bits (98), Expect = 7e-16 Identities = 162/236 (69%), Gaps = 16/236 (7%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| || ||||| ||| ||||| ||| ||| | |||| Sbjct 13380 TTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGTGTTACCA-CTTAGCAGAGTCCTG 13322 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||||||||||||||| ||| || || | ||| || | || Sbjct 13321 TGTTTTTAGTAAACAGTCGCCACCCCCTCTTTTGTGCCAC-------------ATGGGTT 13275 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || | | || | | |||| | |||||||||||| | | |||||||| |||||| Sbjct 13274 TTTTTAGACCCATGTC-CTCCTTTTTCCGAAGTTACGGAGGTAATTTGCCGAGTTCCTTC 13216 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 | || ||| | | | |||| ||| | || || | ||||| ||||||||||| Sbjct 13215 AACATGATTCTCTCTTA-GCCTGAGTTTATTCAACAAGTCCACCAGTGTCGGTTTA 13161 Score = 82.4 bits (90), Expect = 1e-13 Identities = 162/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| || ||||| ||| ||||| ||| ||| | |||| Sbjct 69994 TTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGTGTTACC-ACTTAGCAGAGTCCTG 69936 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||||| ||||||||| ||| || || | ||| || | || Sbjct 69935 TGTTTTTAGT-AACAGTCGCCACCCCCTCTTTTGTGCCAC-------------ATGGGTT 69890 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || | | | || | | |||| | |||||||||||| | | |||||||| |||||| Sbjct 69889 TTTTA-GACCCATGTC-CTCCTTTTTCCGAAGTTACGGAGGTAATTTGCCGAGTTCCTTC 69832 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 | || ||| | | | |||| ||| | || || | ||||| ||||||||||| Sbjct 69831 AACATGATTCTCTCTTA-GCCTGAGTTTATTCAACAAGTCCACCAGTGTCGGTTTA 69777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694398923680