Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq148 284 3e-74 seq149 113 1e-22 >seq148 Length=122497 Score = 284 bits (314), Expect = 3e-74 Identities = 311/415 (75%), Gaps = 19/415 (5%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 51807 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTT 51748 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51747 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 51688 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAG-CTAACCCCAT 191 | ||||||||||||||| ||||||||||| || |||||| || ||||| | Sbjct 51687 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCAGCTTCTTCAAAGAATAACCAACT 51628 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| ||| || ||| || ||||| Sbjct 51627 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTACGACTTTGCG 51568 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311 ||| |||||||||| |||||||||||| |||||||| || ||||| Sbjct 51567 GAGACCTGTGTTTTTGATAAACAGTCGCCAGGGCCTGGTCACTGCGACC----------- 51519 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 ||||| || | | ||| | ||||||||||||||||||| | | ||||| Sbjct 51518 ---AAGCAA----TTTAAGTTACTTGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTG 51466 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 || |||||||| ||||| |||| || |||| |||| |||||| | |||| Sbjct 51465 CCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACTAACCCAC 51411 >seq149 Length=72121 Score = 113 bits (124), Expect = 1e-22 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| | ||||||||||| | |||| Sbjct 14305 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTG 14246 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 14245 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 14201 Score = 109 bits (120), Expect = 1e-21 Identities = 128/176 (73%), Gaps = 14/176 (8%) Strand=Plus/Minus Query 118 ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCG 177 ||||||||||||| | |||||||||||||||||| ||| ||| || |||||||| Sbjct 13477 ACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGCCTTGCATTTAGAGCTTCCAT 13418 Query 178 TTAGCTA--------------ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCAC 223 | || | ||||| | |||| |||| |||||||||||| |||| Sbjct 13417 TAAGATGGTGTCTTAATGAGCACCCCTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCAG 13358 Query 224 ACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||| || | || ||||||| ||||||||||| ||||||||||| Sbjct 13357 ACCCTATACGTCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 13302 Score = 109 bits (120), Expect = 1e-21 Identities = 88/105 (84%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| | ||||||||||| | |||| Sbjct 70909 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTG 70850 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 70849 ACACCATTC-TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 70806 Score = 102 bits (112), Expect = 2e-19 Identities = 127/176 (72%), Gaps = 15/176 (9%) Strand=Plus/Minus Query 118 ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCG 177 ||||||||||||| | |||||||||||||||||| ||| ||| || |||||||| Sbjct 70091 ACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGCCTTGCATTTAGAGCTTCCAT 70032 Query 178 TTAGCTA--------------ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCAC 223 | || | ||||| | |||| |||| |||||||||||| |||| Sbjct 70031 TAAGATGGTGTCTTAATGAGCACCCCTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCAG 69972 Query 224 ACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||| || | || ||||||| ||||||||||| | ||||||||| Sbjct 69971 ACCCTATACGTCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGT-AACAGTCGC 69917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260797982720