Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq148 428 1e-117 seq149 239 1e-60 >seq148 Length=122497 Score = 428 bits (474), Expect = 1e-117 Identities = 395/495 (80%), Gaps = 25/495 (5%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 48615 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 48674 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAG 125 |||||||| ||||||||||||||||||||| |||||||| || || || || | Sbjct 48675 TAATTCGATGCAACGCGAAGAACCTTACCAGGACTTGACATGCCACTTTTTCC-CTGAAA 48733 Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCGTCAGCT 182 | || ||| | |||||| ||||||| ||||||| ||||||||||| Sbjct 48734 AGGGAAGTTCC-------------AGAGTGGACACAGGTGGTGCATGGCTGTCGTCAGCT 48780 Query 183 CGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA 242 |||||| ||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 48781 CGTGTCTTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTGAATTGCCA 48840 Query 243 TCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGA 302 ||| | || | || || ||||||||||||||| ||||||||||||| ||| || Sbjct 48841 G--TTATG--GGAAATTCAAAA--GACTGCCGGTGACAAGCCGGAGGAAGGTGAGGATGA 48894 Query 303 CGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAA 362 |||||| ||| ||||||||||| | ||||| |||||||||||||||||| | |||| Sbjct 48895 CGTCAAGTCAGCATGCCCCTTACGTCCTGGGCGACACACGTGCTACAATGGCCGGGACAA 48954 Query 363 AGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTA 422 || | || || |||||||| | ||| || | || ||| | ||||||||||||||| | Sbjct 48955 AGAGATGCAAACCCGCGAGGGCTAGCCAACCTCAAAAACCCGGTCTCAGTTCGGATTGCA 49014 Query 423 GTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACG 481 | |||||||||| || |||||| ||||||||||||||||| || |||| ||| || || Sbjct 49015 GGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCAGGTCAGCCATACTGCG 49074 Query 482 GTGAATACGTTCCCG 496 ||||||||||||||| Sbjct 49075 GTGAATACGTTCCCG 49089 >seq149 Length=72121 Score = 239 bits (264), Expect = 1e-60 Identities = 376/536 (70%), Gaps = 48/536 (9%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | |||||||||||||| ||||||| | | |||||| |||||| ||| Sbjct 19892 TACGGTCGCAAGACTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACAT 19951 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC--- 117 ||||||||||||||| ||||||| | |||||||||| |||||||| ||| | Sbjct 19952 GTGGTTTAATTCGAAACAACGCGCAAAACCTTACCAGTCCTTGACATAATCTTTTCATAA 20011 Query 118 -----CTCTAGAGAT-AGAGGTTTCCCCT-----TCGGGG-------GACAGAGTGACAG 159 | ||||| | | | || | | ||| | || ||| | |||| Sbjct 20012 TCTTTCACTAGAAAAGATAACTTAAACTTGAGAATCGAGTTTAAAATGA-AGATT-ACAG 20069 Query 160 GTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219 ||| ||||||| ||||||||| |||||| |||| ||||||| |||| | || ||||| | Sbjct 20070 GTGTTGCATGGCTGTCGTCAGTTCGTGTTGTGAAATGTTGGATTAATTTCCTTAACGAAC 20129 Query 220 GCAACCCTTAAGCT----------TAGTTGCCA----------TCATTAAGTTGGGCACT 259 | ||||| | | ||||| | ||| ||| |||| | Sbjct 20130 GAAACCCCTCTATTCATTCACAAATAGTTTGAAAAAATTTTTTTCAATAAATTGGAAA-- 20187 Query 260 CTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCC 319 | | | || || ||||| |||| |||||||| |||| ||||||| || ||||| | Sbjct 20188 -TGAATATACAGCTGGTGATAAACTAGAGGAAGGGAGGGATCACGTCAAGTCCTCATGAC 20246 Query 320 CCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCG 379 ||||||| ||||||||||||||| |||||||| | ||||||| ||||| | || Sbjct 20247 CCTTATGGGCTGGGCTACACACGTGTTACAATGGTAAGTACAAAGAGCAGCAATGACGAA 20306 Query 380 AGGTCAAGCAAATC-CCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTA 438 || |||||||| | | ||| ||| || ||||| |||||| |||||||||||| | Sbjct 20307 AGTCGGAGCAAATCTCAAAAAACTTGCCCT-AGTTCAGATTGTTCTCTGCAACTCGAGAA 20365 Query 439 TATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 ||||||| |||||| ||||||||||| |||||||| || |||||||||| || || Sbjct 20366 CATGAAGCCGGAATCACTAGTAATCGTGGATCAGCACGCCACGGTGAATATGTACC 20421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503997593600