Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq148 226 6e-57 seq149 183 7e-44 >seq148 Length=122497 Score = 226 bits (250), Expect = 6e-57 Identities = 265/356 (74%), Gaps = 18/356 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || ||||| | | |||||||||||| || ||||||||||||||| Sbjct 48173 TTTACAACCCATAGGCCTTCATCCTT-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 48116 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 48115 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 48056 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||| | |||||||| |||||||||||||| Sbjct 48055 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCATTGCCTTGGTAAGCCATTACCTCAC 47996 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||||||| | | | || ||||| | || | | | |||| Sbjct 47995 CAACAAGCTAATCAGCCGCAAGCCCATCTCTTGGC------------GATTTTCATCTTT 47948 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | | | | || | ||||||||| ||||||| | ||| |||| | | | ||| Sbjct 47947 CACTTCTCAGCAATACGAGGTATTAGCCATCGTTTCCAATGGTTGTCCCTCTCCAAAAGG 47888 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC---TCAAGAGAAGCAAGCTTC 354 || ||| || | |||| |||||||||||| ||| ||| | ||||||||||| Sbjct 47887 TAGGTTCTTACGTGTTACGCACCCGTCCGCCACTCATTACAATA-AAGCAAGCTTC 47833 >seq149 Length=72121 Score = 183 bits (202), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTT--TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCC 59 ||||||| | || || |||| |||| |||||| || | |||||||||||||||||| Sbjct 19434 TTTACAACC--AACACAGTCTTCATCACCCACGCGATATAG-CTGGATCAGGCTTTCGCC 19378 Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||||||||||||| |||||||||| | || | | || ||| |||||||||||| ||| Sbjct 19377 CATTGTCCAATATTCCTCACTGCTGCCGCTCGAAAGCGTTTGGGCCGTGTCTCAGTCCCA 19318 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 |||| ||||||||||||||||| ||| || ||||| | | ||||| || ||||| Sbjct 19317 ATGTGGCTGATCATCCTCTCAGATCAGCTAAGGATCTTTGGCTTGGGAGGCTTTTACCCT 19258 Query 180 ACCAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||||| ||||||| || | |||||||| Sbjct 19257 ACCAACTACCTAATCCTACGCAAGCTCATCT 19227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071998284800