Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq148 295 2e-77 seq149 159 1e-36 >seq148 Length=122497 Score = 295 bits (326), Expect = 2e-77 Identities = 347/467 (74%), Gaps = 17/467 (4%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| || ||| ||||| Sbjct 50630 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGACTGGTATTTCA 50571 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| ||||| |||||| | | |||||||| | || ||||||| ||| ||| || Sbjct 50570 CCGCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTTCACTTGG 50511 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | | |||| | |||| |||| ||||| |||||||| | ||||||||| || Sbjct 50510 TGTCACCCAAGTTTCATCCTGGTCATGGTTAGATCACCCGGGTTCGGGTCTAGAAAAAAT 50451 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT---TAACC 372 ||| | |||||||||| |||||||||||||| ||||| || | | | ||||| Sbjct 50450 GACTTAATCGCCCTATTCAGACTCGCTTTCGCTCCGGCT-CCGGATATCTTTCCTTAACC 50392 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 | || || | || |||| |||||||||||||| |||||||| |||| | | Sbjct 50391 TTGCCACGTTTT-CTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GCATT 50337 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 |||| | |||| || | |||| ||| | ||||||| || |||||||||||| Sbjct 50336 TAAATG--------CCTCCCACTGGTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCC 50285 Query 493 CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA 552 || ||||||| ||||||||||||||||||||||||| | |||||||||||||| |||| Sbjct 50284 CCTACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTATTTCGCTATCGGTCACCTAGGA 50225 Query 553 GTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| |||| |||||||| | |||||||||| |||||| Sbjct 50224 GTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 50178 >seq149 Length=72121 Score = 159 bits (176), Expect = 1e-36 Identities = 369/551 (67%), Gaps = 40/551 (7%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACC-ATCCAGTGCT 111 || ||||||||||| ||| || ||||| | |||||| || ||| | | |||||| Sbjct 12539 GGTATTCGGAGTTTCCTTGGGATCAGTAAGGCTTTGGGCCACCATCACCCAGCGAGTGCT 12480 Query 112 CTACCTCCGGG---------AAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||| |||| | | ||||| |||| ||| |||||| || Sbjct 12479 CTACCTCCTTTTAACTTTTAAAGAGAAGCTATACGCTCTACCTCAATAGATTTCGCAGAA 12420 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCC-TATCCACAGGTCATCCCCTCAG 221 |||||||||| | ||| | ||||||| ||||||||| || |||| ||||||||| Sbjct 12419 AACCAGCTATTTCCAAGCTCGATTGGCTTTTCACCCCATAGTCACAAGTCATCCCCATCT 12360 Query 222 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCAT 281 || | || | ||||||||||||||||| || ||| | |||||||||| ||| Sbjct 12359 ATTGCCACAGATGTGGGTTCGGTCCTCCAAAACGTATTATCATTTTTTCAACCTGCTCAT 12300 Query 282 GGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACT------------CATACGCCCT 329 | |||||| ||| | |||||||| | || ||| |||| || | Sbjct 12299 GACTAGATCGCTTGGTTTCGGGTCAAATTTATGAAACTTTTTTAGATTTTCATA-GCTCA 12241 Query 330 ATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAA 389 ||| |||||||| || || || | | | | ||| || || || || | Sbjct 12240 TTTCAAGCTCGCTTTTACTCCGCCTCCACTTAAGAGCTTAGGCTTGCTTCATAAATTTA- 12182 Query 390 CTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCT 449 ||||| | | |||| | ||||||| ||||||| || | | ||||| |||| Sbjct 12181 CTCGCTGACCCATTATGCAAAAGGTACGCCGTTACTTTTT---TAAAA--------AGCT 12133 Query 450 CCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCG--CCAGGGGTACTT 507 |||| | ||||| ||| ||||||| || ||||||| || | ||| || || Sbjct 12132 TCGACTGCTTGTAAGCATTCAGTTTCAGTATCTCTTTCACTTACCTTTCTAGGAGTCTTT 12073 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA-GTATTTAGGCTTAA 566 ||||||||||||||||||||||||| |||||||| ||| ||| | || ||||||||| Sbjct 12072 TTCACCTTTCCCTCACGGTACTTGTTCGCTATCGATCA-GAAGAATATACTTAGGCTTAG 12014 Query 567 CGGGTGGTCCC 577 |||||||||| Sbjct 12013 AGGGTGGTCCC 12003 Score = 156 bits (172), Expect = 2e-35 Identities = 370/552 (67%), Gaps = 43/552 (8%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACC-ATCCAGTGCT 111 || ||||||||||| ||| || ||||| | |||||| || ||| | | |||||| Sbjct 69160 GGTATTCGGAGTTTCCTTGGGATCAGTAAGGCTTTGGGCCACCATCACCCAGCGAGTGCT 69101 Query 112 CTACCTCCGGG---------AAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||| |||| | | ||||| |||| ||| |||||| || Sbjct 69100 CTACCTCCTTTTAACTTTTAAAGAGAAGCTATACGCTCTACCTCAATAGATTTCGCAGAA 69041 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCC-TATCCACAGGTCATCCCC-TCA 220 |||||||||| | ||| | ||||||| ||||||||| || |||| ||||||||| || Sbjct 69040 AACCAGCTATTTCCAAGCTCGATTGGCTTTTCACCCCATAGTCACAAGTCATCCCCATCT 68981 Query 221 GTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCA 280 || || | | |||||||||||||||| || ||| | |||||||||| || Sbjct 68980 ATTGCCA--CAGATTGGGTTCGGTCCTCCAAAACGTATTATCATTTTTTCAACCTGCTCA 68923 Query 281 TGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACT------------CATACGCCC 328 || |||||| ||| | |||||||| | || ||| |||| || | Sbjct 68922 TGACTAGATCGCTTGGTTTCGGGTCAAATTTATGAAACTTTTTTAGATTTTCATA-GCTC 68864 Query 329 TATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAA 388 ||| |||||||| || || || | | | | ||| || || || || | Sbjct 68863 ATTTCAAGCTCGCTTTTACTCCGCCTCCACTTAAGAGCTTAGGCTTGCTTCATAAATTTA 68804 Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGC 448 ||||| | | |||| | ||||||| ||||||| || | | ||||| ||| Sbjct 68803 -CTCGCTGACCCATTATGCAAAAGGTACGCCGTTACTTTTT---TAAAA--------AGC 68756 Query 449 TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCG--CCAGGGGTACT 506 | |||| | ||||| ||| ||||||| || ||||||| || | ||| || | Sbjct 68755 TTCGACTGCTTGTAAGCATTCAGTTTCAGTATCTCTTTCACTTACCTTTCTAGGAGTCTT 68696 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA-GTATTTAGGCTTA 565 |||||||||||||||||||||||||| |||||||| ||| ||| | || ||||||||| Sbjct 68695 TTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGATCA-GAAGAATATACTTAGGCTTA 68637 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 68636 GAGGGTGGTCCC 68625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817597091840