Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq148 210 5e-52 seq149 141 2e-31 >seq148 Length=122497 Score = 210 bits (232), Expect = 5e-52 Identities = 308/417 (74%), Gaps = 18/417 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| |||| | ||||||||| |||||||||| ||| || || || || Sbjct 50563 CCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTTCACTTGGT-GTC 50507 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||||| |||| ||| || |||||| ||||| || |||||||| | Sbjct 50506 ACCCAAG-TTTCATCCTGGTCAT-GGTTAGATCACCCGGGTT-CGGGTCTAGAAAAAAT- 50451 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC---TATTCGGTTAAGC 184 |||| | ||||||| | ||||||||||| |||| || |||| | || |||| | Sbjct 50450 GACTTAATCGCCCTATTCAGACTCGCTTT-CGCTCCGGCTCCGGATATCTTTCCTTAACC 50392 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || ||||| |||||||| | | |||| | ||| ||| |||| |||| | ||| Sbjct 50391 TT-GCCACGTTTTCTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGCATTTAAA 50333 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | ||||||||| |||| ||||| ||||||| | |||||||||||||||| | ||| Sbjct 50332 T--GCCTCCCACTGGTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCCCCTA-CAGGG 50276 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||||| ||| |||||||||| || |||||||||| Sbjct 50275 GTTCTTTTCACCTTTCCCTCACGGTACTATTTCGCTATCGGTCACCTAGGAGTATTTAGC 50216 Query 365 CTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| |||| |||||| | | ||||| || |||| |||| || | ||||||| Sbjct 50215 CTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGTCCCATGCTACTCG 50160 >seq149 Length=72121 Score = 141 bits (156), Expect = 2e-31 Identities = 191/256 (75%), Gaps = 15/256 (6%) Strand=Plus/Minus Query 149 CTCGCTTTTCGCTACGCCTCCCCT-ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 ||||||||| || ||||||| || | | ||| |||| || | ||| | | ||||| Sbjct 12233 CTCGCTTTTA-CTCCGCCTCCACTTAAGAGCTTAGGCTT-GCTTCATAAATTTACTCGCT 12176 Query 208 GACCCATTATACAAAAGGTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTA 264 |||||||||| |||||||||||| || || | |||| || | |||||||||| Sbjct 12175 GACCCATTATGCAAAAGGTACGCCGTTACTTTTTTAAAAAG----CTTCGACTGCTTGTA 12120 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCT 323 |||| | ||||||| |||| ||||||| ||| || || |||||| | ||||||||| Sbjct 12119 AGCATTCAGTTTCAGTATCTCTTTCACTTACCTTTCTAGGAGTCTTTTTCACCTTTCCCT 12060 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTA-GTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||||| |||| |||||| |||| || | || |||| ||| |||| ||||||||| Sbjct 12059 CACGGTACTTGTTCGCTATCGATCAG-AAGAATATACTTAGGCTTAGAGGGTGGTCCCCC 12001 Query 383 --CATATTCAGACAAA 396 | ||||| ||||| Sbjct 12000 TTCTAATTCAAACAAA 11985 Score = 141 bits (156), Expect = 2e-31 Identities = 191/256 (75%), Gaps = 15/256 (6%) Strand=Plus/Minus Query 149 CTCGCTTTTCGCTACGCCTCCCCT-ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 ||||||||| || ||||||| || | | ||| |||| || | ||| | | ||||| Sbjct 68855 CTCGCTTTTA-CTCCGCCTCCACTTAAGAGCTTAGGCTT-GCTTCATAAATTTACTCGCT 68798 Query 208 GACCCATTATACAAAAGGTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTA 264 |||||||||| |||||||||||| || || | |||| || | |||||||||| Sbjct 68797 GACCCATTATGCAAAAGGTACGCCGTTACTTTTTTAAAAAG----CTTCGACTGCTTGTA 68742 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCT 323 |||| | ||||||| |||| ||||||| ||| || || |||||| | ||||||||| Sbjct 68741 AGCATTCAGTTTCAGTATCTCTTTCACTTACCTTTCTAGGAGTCTTTTTCACCTTTCCCT 68682 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTA-GTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||||| |||| |||||| |||| || | || |||| ||| |||| ||||||||| Sbjct 68681 CACGGTACTTGTTCGCTATCGATCAG-AAGAATATACTTAGGCTTAGAGGGTGGTCCCCC 68623 Query 383 --CATATTCAGACAAA 396 | ||||| ||||| Sbjct 68622 TTCTAATTCAAACAAA 68607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241598013440