Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq148 196 1e-47 seq149 132 1e-28 >seq148 Length=122497 Score = 196 bits (216), Expect = 1e-47 Identities = 294/407 (72%), Gaps = 13/407 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||||| || ||||||||| ||| ||| | Sbjct 51164 CGACTACGCCTTTCGGCCTTGCCTTAGGTCCTGACTCACCCTCCATGGACGAACCTAGTG 51105 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 51104 GAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 51045 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC--ACTGAC 175 |||||||||| ||| || ||||| | | | || |||||||| || | | Sbjct 51044 ACATTCTCACTTCCGCTTCG--TCCACAATG-ACTTACATCATTGCTTCACCCTACAG-C 50989 Query 176 ACGACGCTCCCCTACCCA-ACCACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 | ||||||||||||| | | | | | | ||||||||||||| ||| | ||| || Sbjct 50988 AGAACGCTCCCCTACCGATATTTTAGAAATATCCCACAGCTTCGGCAGATCATTTAGTCC 50929 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 | | ||||| ||||||| | | || ||||||||||||||||||||||||| |||| Sbjct 50928 CGG--ACATTTTCGGCGCAAGAACGCTCCACCAGTGAGCTATTACGCACTCTTTAAAGGG 50871 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||| |||||||||||||| | ||| ||| |||||| |||| | Sbjct 50870 TGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCATTCTCACCTCCTTTGTCACTTAA 50811 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || || |||||||||||| ||||||||||||||||||||||| Sbjct 50810 CGATCATTTTGGGGCCTTAGCTAGTGATCTGGGCTGTTTCCCTCTCG 50764 >seq149 Length=72121 Score = 132 bits (146), Expect = 1e-28 Identities = 144/187 (77%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-GACCAGTGA 270 ||||||| | ||| ||| ||| ||| |||||| | ||||| | || | ||||||||| Sbjct 12775 GCTTCGGTGAATATCTTGAGCTCCGATACATTTTAGGCGCTAATAAACATAGACCAGTGA 12716 Query 271 GCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC- 329 |||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || Sbjct 12715 GCTATTACGCTTTCTTAAAAGGATGGCTGCTTCCAAGCCTACCTCCTGGTTGTCTTAGCT 12656 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| || |||||| ||||| || | ||| | ||||||| |||||||| || Sbjct 12655 TACT-AACTTCCTTTACCACTCAGAAATTGCTTTAGAACCTTAGCGTTCGATCTGGGTTG 12597 Query 390 TTTCCCT 396 ||||||| Sbjct 12596 TTTCCCT 12590 Score = 125 bits (138), Expect = 2e-26 Identities = 144/187 (77%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-GACCAGTGA 270 ||||||| | ||| ||| ||| ||| |||||| | ||||| | || | ||||||||| Sbjct 69394 GCTTCGGTGAATATCTTGAGCTCCGATACATTTTAGGCGCTAATAAACATAGACCAGTGA 69335 Query 271 GCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC- 329 |||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || Sbjct 69334 GCTATTACGCT-TCTTA-AAGGATGGCTGCTTCCAAGCCTACCTCCTGGTTGTCTTAGCT 69277 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| || |||||| ||||| || | ||| | ||||||| |||||||| || Sbjct 69276 TACT-AACTTCCTTTACCACTCAGAAATTGCTTTAGAACCTTAGCGTTCGATCTGGGTTG 69218 Query 390 TTTCCCT 396 ||||||| Sbjct 69217 TTTCCCT 69211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177598115840