Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq148 185 1e-44 seq149 102 1e-19 >seq148 Length=122497 Score = 185 bits (204), Expect = 1e-44 Identities = 215/290 (74%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| |||||||| ||||| ||||||| | |||||| || |||||| |||||| Sbjct 48492 CCCTCGCTTTCGTCTCTCAGTGTCAGTTGTGGCCCAGCAGAGTGCTTTCGCCTTTGGTGT 48433 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||| ||| |||||||| |||| || | || Sbjct 48432 TCCTCCCGATCTCTACGCATTTCACCGCTCCACCGGGAATTCCCTCTGCCCCTACCAAAC 48373 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||||| ||| ||| ||||| ||||| | ||| ||| |||| Sbjct 48372 TCTAGCCTCAGAGTTTCTCCTGCCGGCCCAGGGTTAAGCCCTGATCTTTGACAGGAGACT 48313 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || |||||| | |||||| |||||| | |||||||||||||||| ||| | Sbjct 48312 TTTGAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTG 48253 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 48252 TCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 48203 >seq149 Length=72121 Score = 102 bits (112), Expect = 1e-19 Identities = 202/294 (69%), Gaps = 14/294 (5%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||| |||| ||||| ||||||| | || |||| | ||||| || ||||| Sbjct 19757 CCCACGCTGTCGCACCTCAACGTCAGT-AGAGTACCAGAGAATTGCCTTTGCTTTTGGTG 19699 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| ||||| || ||||| ||| |||||| |||||||| | ||||| | Sbjct 19698 TTCCTCCTGATATCAACACATTTTACCTCTACACCAGGAATTCCATTCTCCTCTTACTTA 19639 Query 120 CTCAAG------AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACA 173 |||||| || |||| |||| | || || |||| || || | Sbjct 19638 CTCAAGTCTAGGAATCACAGA---AAATACTT-CTCAAAGTAGAGCTTTGAGATTCTCGA 19583 Query 174 TCT--GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG 231 | | || || | |||||||| || |||||| |||||| | |||| |||||||| | Sbjct 19582 TTTTGGATTTTCTAAACCGCCTACGTGCGCTTTACGCCCAATCATTCCGAATAACGCTCG 19523 Query 232 CCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || | |||||||||||||||||||||||| || |||| | ||| || ||| Sbjct 19522 CCCCTCTCGTATTACCGCGGCTGCTGGCACGAGATTGGCCGGGACTTTTTGCTC 19469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828798715360