Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq148 262 6e-68 seq149 203 5e-50 >seq148 Length=122497 Score = 262 bits (290), Expect = 6e-68 Identities = 224/275 (81%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| |||| || | ||| ||||| Sbjct 52547 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCACTCCACACATGGCTACCCAG 52488 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||||||||| |||| ||| |||||||||||| Sbjct 52487 CGTTTACCGTTGGCACGATAACTGGTATACCAGAGGTGCGTCCTTCCAGGTCCTCTCGTA 52428 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| ||||||||||| || |||| || |||||| ||||||||||||||| Sbjct 52427 CTATGGAAGGCTCCTCTCAATGCTCTAGCGCCTACACCGGATATGGACCGAACTGTCTCA 52368 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 52367 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 52308 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 52307 GTACTACCGCCCCAGGTTGCGATGAGCCGACATCG 52273 >seq149 Length=72121 Score = 203 bits (224), Expect = 5e-50 Identities = 203/261 (78%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| || | | |||| ||| ||||| | |||| |||| |||||| Sbjct 71664 GCTTGAGATGCTTTCAGCAGTTCTGCATTCCGAACGTAGCTACTCAGCGATGCCCTTGGC 71605 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 || ||||||| | ||| ||||||| ||| ||| |||||||||||||| | || || | Sbjct 71604 AGGACAACTGATACACTAGAGGTTCGTC-ATCTCGGTCCTCTCGTACAAGAGAATGCCAC 71546 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||| ||| | || ||| | |||||| ||| |||||||| |||||| || |||| Sbjct 71545 CCTCAATTTTTCAACACCCGAAAAAGATAGGATCCGTACTGTCTCACGACGTACTAAACC 71486 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 || ||| ||| || |||| || ||||||||||| ||||||| | |||| ||||||| | | Sbjct 71485 CAACTCACGTACCGCTTTCATCGGCGAACAGCCGAACCCTTCGAACCTTCTTCAGCTCGA 71426 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || ||| |||||||| Sbjct 71425 GGATGCGATGAGTCGACATCG 71405 Score = 201 bits (222), Expect = 2e-49 Identities = 202/261 (77%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| || | | |||| ||| ||||| | |||| |||| |||||| Sbjct 15065 GCTTGAGATGCTTTCAGCAGTTCTGCATTCCGAACGTAGCTACTCAGCGATGCCCTTGGC 15006 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 || ||||||| | ||| ||||||| ||| || |||||||||||||| | || || | Sbjct 15005 AGGACAACTGATACACTAGAGGTTCGTCATTCTCGGTCCTCTCGTACAAGAGAATGCCAC 14946 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||| ||| | || ||| | |||||| ||| |||||||| |||||| || |||| Sbjct 14945 CCTCAATTTTTCAACACCCGAAAAAGATAGGATCCGTACTGTCTCACGACGTACTAAACC 14886 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 || ||| ||| || |||| || ||||||||||| ||||||| | |||| ||||||| | | Sbjct 14885 CAACTCACGTACCGCTTTCATCGGCGAACAGCCGAACCCTTCGAACCTTCTTCAGCTCGA 14826 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || ||| |||||||| Sbjct 14825 GGATGCGATGAGTCGACATCG 14805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780798789760