Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq148 273 5e-71 seq149 168 2e-39 >seq148 Length=122497 Score = 273 bits (302), Expect = 5e-71 Identities = 310/412 (75%), Gaps = 19/412 (5%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||||||| || | |||||||||| ||| | |||||||| |||||||| Sbjct 48173 TTTACAACCCATAGGCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 48114 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 48113 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 48054 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| |||| | |||| ||| ||||||||| | ||| Sbjct 48053 GGCTGATCATCCTCTCAGACCAGCTACTGATCATTGCCTTGGTAAGCCATTACCTCACCA 47994 Query 185 ACTAGCTAATCCCATCTG--GGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 || ||||||| || | | | |||| | ||| | | | ||||| Sbjct 47993 ACAAGCTAAT--CAGCCGCAAGCCCATCTCTT-------GGC-----GATTTTCATCTTT 47948 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 | | | || | ||||||||||| |||||||| ||||| |||| ||||| ||| Sbjct 47947 CACTTCTCAGCAATACGAGGTATTAGCCATCGTTTCCAATGGTTGTCCCTCTCCAAAAGG 47888 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || ||| | |||| |||||||||||||||| | | | | |||||||| | | Sbjct 47887 TAGGTTCTTACGTGTTACGCACCCGTCCGCCACTCATTA-CAATAAAGCAAGCTTCAT-- 47831 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 47830 TGCATTCGTACGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 47779 >seq149 Length=72121 Score = 168 bits (186), Expect = 2e-39 Identities = 143/176 (81%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||| ||| |||||| || |||| ||||||||| |||||||||| ||||||||| ||| Sbjct 19417 CTTCATCACCCACGCGATATAGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCTCAC 19358 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| | || | | || ||| |||||||||||| ||| |||||||| |||||||||| Sbjct 19357 TGCTGCCGCTCGAAAGCGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTC 19298 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 ||| |||||| ||||| | | || || ||| |||||| ||||||| ||||||| Sbjct 19297 AGATCAGCTAAGGATCTTTGGCTTGGGAGGCTTTTACCCTACCAACTACCTAATCC 19242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222398044160