Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq148 342 2e-91 seq149 241 4e-61 >seq148 Length=122497 Score = 342 bits (378), Expect = 2e-91 Identities = 282/341 (83%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| |||||||||| |||||| |||||| ||||||||||||| | |||||||||| | | Sbjct 47977 GCGGCTGATTAGCTTGTTGGTGAGGTAATGGCTTACCAAGGCAATGATCAGTAGCTGGTC 48036 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 48037 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 48096 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| |||||| Sbjct 48097 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 48156 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAATGACGGTACTTGAGGAGGAA 399 ||||| |||| ||||| ||| | |||| |||| ||| |||||||| |||||| || Sbjct 48157 GGCCTATGGGTTGTAAACTTCTTTTCTCAGAGAAGAATATTGACGGTATCTGAGGAATAA 48216 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||||| ||||||||||||||||||| || ||| || ||||||||||||| Sbjct 48217 GCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGA 48276 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | | |||||||||| || |||||||| ||| ||||| Sbjct 48277 ATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTCAAAAGTC 48316 >seq149 Length=72121 Score = 241 bits (266), Expect = 4e-61 Identities = 256/334 (77%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||| ||||| || | ||||| | | |||| |||| || | Sbjct 19237 GCGTAGGATTAGGTAGTTGGTAGGGTAAAAGCCTCCCAAGCCAAAGATCCTTAGCTGATC 19296 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||||||| |||||||||||| |||||| | | || | |||||| Sbjct 19297 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACGCTTTCGAGCGGCAGC 19356 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||||||| ||||||||| |||||||||| |||| | |||||| | |||||| Sbjct 19357 AGTGAGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCTATATCGCGTGGGTGATGAA 19416 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGTCCTC-AAGGAAGATAATGACGGTACTTGAGGAGGA 398 | | | ||| ||||| | || ||| | ||||| ||||| ||| | | Sbjct 19417 GACTGTGTTGGTTGTAAAACCCTTGACTCTTTGAAAGATTATGACAAATAAAGAGCAAAA 19476 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 || |||||| || |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 19477 AGTCCCGGCCAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCGAGCGTTATTCGG 19536 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 ||| | | |||||||||| | |||||| ||||| Sbjct 19537 AATGA-TTGGGCGTAAAGCGCACGTAGGCGGTTT 19569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497597603840