Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq148 215 2e-53 seq149 118 4e-24 >seq148 Length=122497 Score = 215 bits (238), Expect = 2e-53 Identities = 396/566 (70%), Gaps = 17/566 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| |||| | | |||||||||| || |||||||| ||| Sbjct 50426 CGAGTCTGAATAGGGCGATTAAGTCATTTTTTCTAGACCCGAACCCGGGTGATCTAACCA 50485 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||||||||| | ||| |||| || ||||||||||| || ||||||||||| Sbjct 50486 TGACCAGGATGAAACTTGGGTGACACCAAGTGAAGGTCCGAACCGACCGATGTTGAAAAA 50545 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | | ||||||| ||||| ||| ||||||| | | | |||| ||| ||||||||||| Sbjct 50546 TCGGCGGATGAGTTGTGGTTAGCGGTGAAATACCAGTCGAACTCGGAGCTAGCTGGTTCT 50605 Query 180 CTCCGAAAACTATTTAG--GTAGTGCCTCAAGTATCACCATC-GGGGGTAGAGCACTGTT 236 | |||||| || || | || | ||| || | || |||||| ||||||||| Sbjct 50606 CCCCGAAATGCGTTGAGGCGCAGCGGTTCA--TAAGGCTGTCTAGGGGTAAAGCACTGTT 50663 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAG- 293 || ||| | | ||| ||||||| | | |||||||| |||| | || | Sbjct 50664 TCGGTGCGGGCTGCGAAAGCG--GTACCAAATCGTGGCAAACTCTGAATACTAGATATGC 50721 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | || | | |||||| |||| | |||| | | | ||||||| || | || Sbjct 50722 TATTTATGAGCCAGTGAGACAGTGGGGGATAAGCTTCATTGTCGAGAGGGAAACAGCCCA 50781 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 || | |||||||||||| |||||| | ||||| || || || || || |||| | Sbjct 50782 GATCACTAGCTAAGGCCCCAAAATGATCGTTAAGT--GACAAAGGAGGTGAGAATGCTGA 50839 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| | |||| ||| |||| |||||||||| | |||||||||||||||| |||||||| Sbjct 50840 AACAACCAGGAGGTTTGCTTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTAATAGCTCACT 50898 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 || ||| || ||| || ||| || || | ||| | ||| ||||||| |||||| Sbjct 50899 GGTGGAGCGTTCTTGCGCCGAAAAT-GTCCGGGACTAAATGATCTGCCGAAGCTGTGGGA 50957 Query 534 TCATT-TATATGATCGGTAGGGGAGC 558 | || || | |||||||||||||| Sbjct 50958 TATTTCTAAAATATCGGTAGGGGAGC 50983 >seq149 Length=72121 Score = 118 bits (130), Expect = 4e-24 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||||||||| |||||| |||| |||| |||| | ||| ||| ||||| Sbjct 12276 GACCCGAAACCAAGCGATCTAGTCATGAGCAGGTTGAAAAAATGATAATACGTTTTGGAG 12335 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA-GGGGTGAAAGGCT 153 | |||||||||| ||| | || | |||||||| |||| || ||||||||| || Sbjct 12336 GACCGAACCCACATCTGTGGCAATAGATGGGGATGACTTGTGACTATGGGGTGAAAAGCC 12395 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || | | ||||||||||||||||| ||| ||||| ||||| |||||| || Sbjct 12396 AATCGAGCTTGGAAATAGCTGGTTTTCTGCGAAATCTATTGAGGTAGAGC 12445 Score = 114 bits (126), Expect = 4e-23 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||||||||| |||||| |||| |||| |||| | ||| ||| ||||| Sbjct 68898 GACCCGAAACCAAGCGATCTAGTCATGAGCAGGTTGAAAAAATGATAATACGTTTTGGAG 68957 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA-GGGGTGAAAGGCT 153 | ||||||||| | ||| | || | |||||||| |||| || ||||||||| || Sbjct 68958 GACCGAACCCAATC-TGTGGCAATAGATGGGGATGACTTGTGACTATGGGGTGAAAAGCC 69016 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || | | ||||||||||||||||| ||| ||||| ||||| |||||| || Sbjct 69017 AATCGAGCTTGGAAATAGCTGGTTTTCTGCGAAATCTATTGAGGTAGAGC 69066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689597296640