Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq148 226 1e-56 seq149 100 1e-18 >seq148 Length=122497 Score = 226 bits (250), Expect = 1e-56 Identities = 350/488 (72%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| || |||||| || Sbjct 52138 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTCCGGCTGATTTCC 52079 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||| || |||||||||| Sbjct 52078 GTCCAGCCTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGA-GGTGACCGCCCCAG 52020 Query 121 TTAAACTACCCACCAGGCACTGTC-CCCAACCCAGATCATGG---GCCAAGGTTAGATAT 176 | ||||| |||||| | |||||| | || ||| || |||| ||||| | Sbjct 52019 TCAAACTGCCCACCTGAAACTGTCAAGCGTCCTGCTTCAAGGAACGCCA---TTAGAATT 51963 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCA-CAACCACTAGCGTGGCCGCATC 235 | | | ||||||||| | ||| | ||||| || | | | | | || Sbjct 51962 CTAGCTCCTCCAGAGTGGTCTCTCACTGTTGGCTCCAGTTTCCCCGAAAGAAAAC-CTTC 51904 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | |||||||||| || | || || || ||||| ||||| |||||||| ||| | Sbjct 51903 AACGCCTCCCACCTAGGCTGCGCAAGAAGAGC-CCGAA-CCCAATTCCAAGCTACAGTCA 51846 Query 294 AG-GTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || || |||||||| |||| | || | | ||||||| || | | || Sbjct 51845 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 51786 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| | || | ||||||| |||||||||| ||||||| |||||||| Sbjct 51785 TTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTTACGCCTTTCGTGCGGGTCGGAA 51726 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 51725 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 51666 Query 473 GGGCTTCA 480 |||||||| Sbjct 51665 GGGCTTCA 51658 >seq149 Length=72121 Score = 100 bits (110), Expect = 1e-18 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 || ||||||| ||||| | ||||||| |||| || ||| ||||||| || Sbjct 14355 AAACTATAGTAAAGGTGCATAGGGTCTTACCGTCTACTTTCGGGAACTCCGCATCTTCAC 14296 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400 | | ||||||||| | | || | |||||||| ||| |||||| || |||||| Sbjct 14295 GGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTGACACCATTCA 14236 Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 435 ||||||||||||||||||||||||||||||||||| Sbjct 14235 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 14201 Score = 96.9 bits (106), Expect = 1e-17 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 || ||||||| ||||| | ||||||| |||| || ||| ||||||| || Sbjct 70959 AAACTATAGTAAAGGTGCATAGGGTCTTACCGTCTACTTTCGGGAACTCCGCATCTTCAC 70900 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400 | | ||||||||| | | || | |||||||| ||| |||||| || |||||| Sbjct 70899 GGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTGACACCATTC- 70841 Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 435 ||||||||||||||||||||||||||||||||||| Sbjct 70840 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 70806 Score = 91.5 bits (100), Expect = 5e-16 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||||||||| |||||| || ||| | | |||| ||| ||| |||||| || Sbjct 14670 TCGACTTGTAAGTCTCACAGTCAGGCAAGCTTTTACCATTACGCTCTCCAGCTGATTTCC 14611 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||| ||||| | | | |||||||| ||| ||| || |||||||||| Sbjct 14610 GTCCAGCTTGAGCTTACCTTCGCACACTTCCGTTACTCTTTAGGA-AGCGACCGCCCCAG 14552 Query 121 TTAAACTACCCA 132 | |||||||||| Sbjct 14551 TCAAACTACCCA 14540 Score = 87.8 bits (96), Expect = 6e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||||||||| |||||| || ||| | | |||| ||| ||| |||||| || Sbjct 71271 TCGACTTGTAAGTCTCACAGTCAGGCAAGCTTTTACCATTACGCTCTCCAGCTGATTTCC 71212 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||| | ||||| | | | |||||||| ||| ||| || |||||||||| Sbjct 71211 GTCCAGCTTGA-GCTACCTTCGCACACTTCCGTTACTCTTTAGGA-AGCGACCGCCCCAG 71154 Query 121 TTAAACTACCCA 132 | |||||||||| Sbjct 71153 TCAAACTACCCA 71142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702397276160