Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq148 783 0.0 >seq148 Length=122497 Score = 783 bits (868), Expect = 0.0 Identities = 771/993 (78%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||||||||| || | ||||| | || |||||||||| || || | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| ||||| || | |||||| |||| || ||| |||| || ||||| ||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 ||||| || |||||||| |||||||| || || |||||||| | | ||||| ||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||||||| |||||||| || |||| | || ||||| || ||| | |||||||| || || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| ||||| | || |||||| | || ||||||||||||| |||||| | || Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | | | || ||||||||||| |||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 | | ||||||||||| |||||| ||||| ||||| || ||||| ||||| ||| | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||||||| | ||||||| ||||||| ||||||||||| || | ||||||| | ||||| Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||| |||||||| |||| ||| | ||||||||||| || ||||| || |||||||| || Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 ||||||||||| ||||| ||||| ||||| ||||| || | |||||||| ||||| || Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || || || |||||| | | | | || || || |||| || || ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 |||||| || ||||||||||| || || |||||||| || || | ||||||||| | || Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 ||||||||| |||||||| || ||||||||||| | ||| |||| || ||||||||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 | |||||||||||||||||||| || | | || ||||| | || | ||||| Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||||||| | | ||||| ||| | || |||||||| ||||||||||||||||| Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 |||||||||||| | || | |||| || ||| Sbjct 77927 TCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 553 bits (612), Expect = 2e-152 Identities = 750/1036 (72%), Gaps = 15/1036 (1%) Strand=Plus/Plus Query 161509 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGG 161568 || ||||| ||||| |||| ||||||||| || || ||||||||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 161569 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCAC 161627 || || || || || ||||| || || || ||||| | || |||||| | || || || Sbjct 31697 TCAGG-GTTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 161628 GACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAA 161686 || || | || |||||||| ||||| | || ||| ||| | | ||| ||||| Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 161687 ATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT- 161745 || | | ||||| || || |||||||| | ||||||||| ||| || || || Sbjct 31816 CTTCT-TAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCT-TTATTATTC 31873 Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 || ||||||||||| |||||||| ||||| | ||| ||| | || || || ||| Sbjct 31874 CTTTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGG 31933 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAA 161865 | ||||| || || |||||| |||| |||| ||||| ||||||||||||||||||||| Sbjct 31934 ACATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAA 31993 Query 161866 CTTGCTCGTCTTATCGGT----ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 161921 |||| ||| || || || ||||| || || |||||||||||||| | |||||| Sbjct 31994 ATTGCACGT----TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTAT 32049 Query 161922 TGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGC 161981 | |||| || || || || | || |||||| | ||||| || ||||| || || Sbjct 32050 TTCTGTATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGC 32109 Query 161982 GCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAA 162041 || || || || || || |||||| | ||| | | ||| | ||||| |||||||| Sbjct 32110 TCCTAGCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAA 32169 Query 162042 TTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCT 162101 ||||| | || || ||||| ||||||||||| || ||| | | |||| ||| || || Sbjct 32170 CTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACT 32229 Query 162102 CTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAA 162161 | ||| |||||||||| ||||| |||||||| || | |||||||||| ||||| Sbjct 32230 TTGTGCGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAA 32289 Query 162162 TACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAA 162221 || ||| || ||| || | || || | || || || || || |||||||| || || Sbjct 32290 CACATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAA 32349 Query 162222 CCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTT 162281 |||||||||||||| || || ||| | |||||| || || |||||||| || ||||| Sbjct 32350 TCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTT 32409 Query 162282 TATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGC 162341 |||| | || ||||| || | ||||| |||| ||| |||| || || | || | || Sbjct 32410 TATGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGC 32469 Query 162342 TCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGA 162401 | | ||| | ||||| || || || || || || || ||||| || ||||| |||||||| Sbjct 32470 TTTAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGA 32529 Query 162402 ATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGC 162461 ||||||||| ||||| || || ||||| || || || |||||| ||||||| ||| |||| Sbjct 32530 ATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGC 32589 Query 162462 ACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAA 162521 | ||||| || ||||| || |||||||||||||||| ||| | || | || || Sbjct 32590 TGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAA 32649 Query 162522 CGCACTGTGAATGGTT 162537 ||| || | ||||||| Sbjct 32650 CGCTCT-TTAATGGTT 32664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551374897248000