Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq148 798 0.0 >seq148 Length=122497 Score = 798 bits (884), Expect = 0.0 Identities = 764/973 (79%), Gaps = 4/973 (0%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||||| || ||| | |||||| | || |||||||||| ||||| | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGCTT-CATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | ||||||| |||| || ||| |||| ||| |||| || || Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 ||||| || || ||||| ||||| || || || |||||||| | | || |||||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||||||| ||||||| || | ||| |||| ||||| || ||| | ||||||||||| || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || || | ||||||||| | |||||||||||||||| |||||| | || Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCG 189209 | |||||| || | || | | | |||||||||||||| |||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 189210 TCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCG 189268 | | ||||||||||| |||||| ||| |||||||||| ||||| ||||| ||||| | | Sbjct 78527 TTTAGGTATGCGTCCATGGATC-GCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 78469 Query 189269 CAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 | || || | |||| || | |||||||||||||||||||||| ||||| || |||| Sbjct 78468 CTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 78409 Query 189329 TCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 189388 || || || ||||||| |||| | || |||||||| ||||||||||| || ||||||| Sbjct 78408 TCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACC 78349 Query 189389 CCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATG 189448 | ||||||||||| || || || ||||| || ||||||||| | ||||| |||||||| | Sbjct 78348 CATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 78289 Query 189449 GTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATG 189508 ||||||| || || ||||| | |||||||||| ||||||| ||| || ||| | | Sbjct 78288 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 78229 Query 189509 GTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCG 189568 ||||||| || || |||||||||||||| |||||||||||||| |||||||| || |||| Sbjct 78228 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 78169 Query 189569 GTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCG 189628 ||||| | || ||||||||||| || ||||||||||| |||||| | ||||||||| | | Sbjct 78168 GTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 78109 Query 189629 CTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCA 189688 |||| |||||||| || ||||| ||||| || || | || | || |||||||||| Sbjct 78108 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 78049 Query 189689 ACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACA 189748 || | ||||| ||||||||||| ||||| || | ||| ||||||||||| | |||| Sbjct 78048 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 77989 Query 189749 CATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACG 189808 | ||||||||| || ||||||||||| | ||||||||||| ||||| |||||||||| Sbjct 77988 CTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 77929 Query 189809 CTCACAACTTCCC 189821 ||||||||||||| Sbjct 77928 CTCACAACTTCCC 77916 Score = 524 bits (580), Expect = 1e-143 Identities = 730/1018 (72%), Gaps = 4/1018 (0%) Strand=Plus/Plus Query 189984 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 190043 |||||||| | |||||||||||||| || || || || || || || || ||||| Sbjct 31640 TGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGGTCA 31699 Query 190044 GGATTACTTCTTTTTCCC-ACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGAC 190102 || ||| || || ||||| || || || || ||| | ||||| ||| | || || || || Sbjct 31700 GGGTTA-TTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACTAC 31758 Query 190103 GTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTT 190162 |||| ||| ||||| || || || | || | || | || ||| || || Sbjct 31759 ATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAACTT 31818 Query 190163 TCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 190222 | ||||| ||||| ||||| || || || ||||||||| ||| | | | ||||| Sbjct 31819 CTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTTTG 31878 Query 190223 GGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 190282 |||||||||| ||||||| ||||| | ||| ||| | || || || ||| | || Sbjct 31879 GGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACATT 31938 Query 190283 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 190342 ||| || || |||||| |||| |||| ||||| ||||||||||||||||||||| | || Sbjct 31939 TGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 31998 Query 190343 ACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTT 190401 |||| ||| | || ||||| || || |||||||| ||||| | |||||| |||| | Sbjct 31999 ACGT-TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGTAT 32057 Query 190402 TTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCT 190461 | ||| || || | || || ||| | || ||||| ||||||| || || || || Sbjct 32058 TCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAGCT 32117 Query 190462 TCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGC 190521 ||||||| || || || ||||| ||| | | ||||| || |||||||| |||||||| Sbjct 32118 TCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGACTT 32177 Query 190522 TGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAA 190581 | ||||| ||||| ||||||||||| || ||| | || || | ||| |||| | || | Sbjct 32178 TAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGCGA 32237 Query 190582 TCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTA 190641 | || |||| |||||||| || || | | |||||||||||| |||||||| || Sbjct 32238 TTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATTCC 32297 Query 190642 AAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCT 190701 || || || | ||||| | ||||| || ||||| ||||| || || || ||||||| Sbjct 32298 GTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTTCT 32357 Query 190702 GGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCT 190761 |||| ||||| |||||||| || || || || | ||||| || ||||||||| | | Sbjct 32358 GGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTAT 32417 Query 190762 TTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACC 190821 ||||||| || | ||||| |||| | | || || || | ||| | ||| | || Sbjct 32418 TTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAATT 32477 Query 190822 TTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGA 190881 | ||||| ||||| || || || ||||| || | || || |||||||| || || || | Sbjct 32478 TACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGAAA 32537 Query 190882 CTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTG 190941 |||| || ||||||||||| ||||| || |||||| ||||| | ||| |||| || | Sbjct 32538 CTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 32597 Query 190942 ATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 |||| || ||||| || ||||||| || || || || || ||| | || |||||||| Sbjct 32598 ATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 32655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634078731840000