Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3 351 4e-94 >seq3 Length=2414369 Score = 351 bits (388), Expect = 4e-94 Identities = 485/665 (73%), Gaps = 33/665 (5%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 |||| |||||| |||||||||||||||||| | || || ||||||| | ||||| | Sbjct 450465 TTCGTAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAATCCCATCTAAGG 450406 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| | | ||||||||||||| ||||||| | || ||||||||||||| ||| Sbjct 450405 CTAAATACAGACGGGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGAACT 450346 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC-AGAC 212 ||| |||||||||||||||| || |||||||||||| ||||||||| ||| | || | Sbjct 450345 TTGAAAAGAGAGTTAAAAAGTACTTGAAATTGTTGAGAGGGAAGCGATTGGATCCTACGG 450286 Query 213 TTGCCCGCAGTTGCTCAA-CCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGC 271 |||| | ||| || || || ||| ||| || | | ||| | | || |||| Sbjct 450285 TTGCGCCCAG--GCACACGCCTGCCTAACGGTTGGCTGAATGCGCTGGGTGCTGGTCAGC 450228 Query 272 ATCAGCT---CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCC--CTTCGGGGGGTG 326 || | | ||||||| || ||| || ||| ||| |||| || | | || Sbjct 450227 ATGGGTTGACCGGGCGG---GACAAAA--CCGGGGGTTGTTACCCCGGCTATGTCGCCTG 450173 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGG--TCCGCG--CTCCGGCT-- 379 | | | | |||| | | ||| || ||||| |||| | || || | Sbjct 450172 GTCGATC-----GAGGAACGAAGGGCGCTCT---CTGAGTCCTCCGGGAACTGCGTCCTC 450121 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 | |||||||||| || |||| || |||||||||||| |||||||||||||||||||||| Sbjct 450120 AAGATGCTGGCGGAAAGGTTCCAATCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAAC 450061 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGG 498 || ||||||| |||||| |||||| || ||| || || ||| || |||| Sbjct 450060 ATGCATGCGAGCTGGTGGGTGGAAAACCCATGAAGCGCAAGTAACCTGACTGG---TGGG 450004 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | || | ||||||||||||| | ||| || ||| || || | ||||| |||| Sbjct 450003 ATGGCCTGTGCCTGCACCATCGACCCCGCTTGACGTTTTCTGAAGGCTGGGAGTACGAGC 449944 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 449943 ATGCCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAA 449884 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| || || ||| ||||||||||| | || | ||||||||||| Sbjct 449883 CTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGG 449824 Query 679 GGCGA 683 ||||| Sbjct 449823 GGCGA 449819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079991119700