Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3 628 7e-178 seq64 156 1e-35 >seq3 Length=2414369 Score = 628 bits (696), Expect = 7e-178 Identities = 449/509 (88%), Gaps = 8/509 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||||| ||| |||| |||| |||||||||||||||||| Sbjct 454573 GTACTCATTCCAATTACCAGACCTGAAAAGGCCCAGTATTGTTATTTATTGTCACTACCT 454632 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454633 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 454692 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||| Sbjct 454693 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCATGGTA 454752 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 454753 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCA 454812 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTT 297 |||||||||||||||||| ||||||| |||| ||||| ||| | | || || || Sbjct 454813 CAAGGCCATGCGATTCGTGAAGTTATCATGATTCACC-GCGAGTCGGGCAGAGCCCGGTC 454871 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 || ||||||||||||||||| ||||||| |||||| ||| ||| ||| ||||||||| Sbjct 454872 GGCCTTTTATCTAATAAATACGTCCCTTCCAGAAGTC-GGGATTTACGCACGTATTAGCT 454930 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||| |||| |||| ||||| |||| |||||| ||||||||||| |||||||||||| Sbjct 454931 CTAGATTTACTACGGGTATCCGAGTAG-CAGGTACCATCAAATAAACTATAACTGATTTA 454989 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||| Sbjct 454990 ATGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTAAT 455049 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| Sbjct 455050 CTTTGAGACAAGCATATGACTACTGGCAG 455078 Score = 628 bits (696), Expect = 7e-178 Identities = 449/509 (88%), Gaps = 8/509 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||||| ||| |||| |||| |||||||||||||||||| Sbjct 458177 GTACTCATTCCAATTACCAGACCTGAAAAGGCCCAGTATTGTTATTTATTGTCACTACCT 458236 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 458237 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 458296 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||| Sbjct 458297 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCATGGTA 458356 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 458357 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCA 458416 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTT 297 |||||||||||||||||| ||||||| |||| ||||| ||| | | || || || Sbjct 458417 CAAGGCCATGCGATTCGTGAAGTTATCATGATTCACC-GCGAGTCGGGCAGAGCCCGGTC 458475 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 || ||||||||||||||||| ||||||| |||||| ||| ||| ||| ||||||||| Sbjct 458476 GGCCTTTTATCTAATAAATACGTCCCTTCCAGAAGTC-GGGATTTACGCACGTATTAGCT 458534 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||| |||| |||| ||||| |||| |||||| ||||||||||| |||||||||||| Sbjct 458535 CTAGATTTACTACGGGTATCCGAGTAG-CAGGTACCATCAAATAAACTATAACTGATTTA 458593 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||| Sbjct 458594 ATGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTAAT 458653 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| Sbjct 458654 CTTTGAGACAAGCATATGACTACTGGCAG 458682 >seq64 Length=12886 Score = 156 bits (172), Expect = 1e-35 Identities = 103/114 (90%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||||| ||| |||| |||| |||||||||||||||||| Sbjct 6371 GTACTCATTCCAATTACCAGACCTGAAAAGGCCCAGTATTGTTATTTATTGTCACTACCT 6430 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6431 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 6484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510393746944