Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2029 134 2e-29 seq3559 102 1e-19 >seq2029 Length=64692 Score = 134 bits (148), Expect = 2e-29 Identities = 179/247 (72%), Gaps = 14/247 (6%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || ||| | | ||||| | ||| || Sbjct 54487 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTAC-GACTTTGCGGA 54429 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| ||||||||||| || || ||||||||| | Sbjct 54428 GACCTGTGTTTTTGATAAACAGTCGCCAGGGCCTGGTCACTGCGACCA----------AG 54379 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | || | | |||||||||||||||||||||||||||| |||||||||| | Sbjct 54378 CATTT--TTGAGTTACT-TGGCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGT 54322 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || | |||| |||| ||||||| ||||||||||||||| Sbjct 54321 TCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACCAACCCACCTGTGTCGGTT 54262 Query 242 TACGGTA 248 ||||||| Sbjct 54261 TACGGTA 54255 >seq3559 Length=35662 Score = 102 bits (112), Expect = 1e-19 Identities = 172/242 (71%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| || ||||| ||| ||||| ||| ||| | |||| Sbjct 29307 TTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGTGTTACCA-CTTAGCAGAGTCCTG 29249 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||||||||||||||| ||| | ||| | || | || | | | ||| || Sbjct 29248 TGTTTTTAGTAAACAGTCGCCACCCCCAATTTTGTGACA-CATAGCAAACACAAAGTGTA 29190 Query 128 GTTCA---CCAGC-AGTG--GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 |||| || ||| | | |||| | |||||||||||| | | |||||||| | Sbjct 29189 TTTCAATTTGTGCTTGTGATGTCCTCCTTATTCCGAAGTTACGGAGGTAATTTGCCGAGT 29130 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | || ||| | | | |||||||| || | || | ||||||||||||||| Sbjct 29129 TCCTTCAACATGATTCTCTCTTA-GCCTTAGTTTTTACAACGAGTCCACCTGTGTCGGTT 29071 Query 242 TA 243 || Sbjct 29070 TA 29069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694375782800