Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2029 286 9e-75 seq3559 185 2e-44 >seq2029 Length=64692 Score = 286 bits (316), Expect = 9e-75 Identities = 315/419 (75%), Gaps = 23/419 (5%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 54673 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTT 54614 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54613 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 54554 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC----GTTAGCTAACCC 188 | ||||||||||||||| ||||||||||| || |||||| | | ||||| Sbjct 54553 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCAGCTTCTCCACAAATGAATAACCA 54494 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||||||| |||||||||||| ||| ||| || ||| || ||| Sbjct 54493 ACTTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATGTTGTCTTACGACTTT 54434 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCATGA 307 || ||| |||||||||| |||||||||||| |||||||| || ||||| |||| Sbjct 54433 GCGGAGACCTGTGTTTTTGATAAACAGTCGCCAGGGCCTGGTCACTGCGACCAAGCAT-- 54376 Query 308 GCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 || | | | ||| ||| | ||||||||||||||||||| | | Sbjct 54375 --TTTTG----AGTTACTT----------GGCACCCCTTCTCCCGAAGTTACGGGGTTAT 54332 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||| |||||||| ||||| |||| || ||||||||| ||||||| | |||| Sbjct 54331 TTTGCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACCAACCCAC 54273 >seq3559 Length=35662 Score = 185 bits (204), Expect = 2e-44 Identities = 216/297 (73%), Gaps = 30/297 (10%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| | ||||||||| | | |||| Sbjct 29525 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGTGGGGAAGTCGTG 29466 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 29465 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 29406 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-----------GTTAG 181 |||||||||||||||||| ||| ||| || ||||||| | |||| Sbjct 29405 GAGTTACGGCCGCCGTTTACTGGGCCTTGCATTTAGAGCTTGTCTGATTCTCAAAATTAG 29346 Query 182 -----CT--------------AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCA 222 || |||| | |||| |||| |||||||||||| |||| Sbjct 29345 AACAACTTTGAGAGAGAGATGCACCCTTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCA 29286 Query 223 CACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||| || | || ||||||| ||||||||||| ||||||||||| Sbjct 29285 GACCCTATACGTCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 29229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260754611200