Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2029 428 1e-117 seq288 226 9e-57 >seq2029 Length=64692 Score = 428 bits (474), Expect = 1e-117 Identities = 397/495 (80%), Gaps = 25/495 (5%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 50995 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 51054 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAG 125 |||||||| ||||||||||||||||||||| |||||||| || || || || | Sbjct 51055 TAATTCGATGCAACGCGAAGAACCTTACCAGGACTTGACATGCCACTTTTTCC-CT---G 51110 Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCGTCAGCT 182 | || || ||| ||||||| ||||||| ||||||| ||||||||||| Sbjct 51111 AAAGGGGAAG----TTC------CAGAGTGGACACAGGTGGTGCATGGCTGTCGTCAGCT 51160 Query 183 CGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA 242 |||||| ||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 51161 CGTGTCTTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTGAATTGCCA 51220 Query 243 TCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGA 302 ||| |||| | | || ||||||||||||||| ||||||||||||| ||| || Sbjct 51221 G---TAA--TGGGAAATTCAAAA-GACTGCCGGTGACAAGCCGGAGGAAGGTGAGGATGA 51274 Query 303 CGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAA 362 |||||| ||| ||||||||||| | ||||| |||||||||||||||||| | |||| Sbjct 51275 CGTCAAGTCAGCATGCCCCTTACGTCCTGGGCGACACACGTGCTACAATGGCCGGGACAA 51334 Query 363 AGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTA 422 || | || || |||||||| | ||| || | || ||| | ||||||||||||||| | Sbjct 51335 AGAGATGCAAACCCGCGAGGGCTAGCCAACCTCAAAAACCCGGTCTCAGTTCGGATTGCA 51394 Query 423 GTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACG 481 | |||||||||| || |||||| ||||||||||||||||| || |||| ||| || || Sbjct 51395 GGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCAGGTCAGCCATACTGCG 51454 Query 482 GTGAATACGTTCCCG 496 ||||||||||||||| Sbjct 51455 GTGAATACGTTCCCG 51469 >seq288 Length=17438 Score = 226 bits (250), Expect = 9e-57 Identities = 370/533 (69%), Gaps = 40/533 (8%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||| ||||||| | | |||||| |||||| ||| Sbjct 8345 TACGGTCGCAAGATTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACAT 8286 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCC-- 118 ||||||||||||||| ||||||| | |||||||||| |||||||| ||| | | Sbjct 8285 GTGGTTTAATTCGAAACAACGCGCAAAACCTTACCAGTCCTTGACATAATCTTTTCACAA 8226 Query 119 TCTAG---AGAT---AGAGGTTTCCCCTTCGGGGGACAGA---------GTGA------C 157 ||| | || ||| ||| || | | | | |||| | Sbjct 8225 TCTTTGTTATATTTAAGATAATTCTTTTTTTTGTTAAAAAAAAAAACAAGTGAAGATTAC 8166 Query 158 AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGA 217 ||||| ||||||| ||||||||| |||||| |||| ||||||| |||| | || ||||| Sbjct 8165 AGGTGTTGCATGGCTGTCGTCAGTTCGTGTTGTGAAATGTTGGATTAATTTCCTTAACGA 8106 Query 218 GCGCAACCCTT--------------AAGCTTAGTTGCCATCATT--AAGTTGGGCACTCT 261 || ||||| | || ||| ||| | | | |||| | Sbjct 8105 ACGAAACCCCTCTTTTCATTCAAAAAATCTTTGTTTCAAGAAAACAAAGTCTTTTAAATG 8046 Query 262 AAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCC 321 || || || || ||||| | || |||||||| |||| ||||||| || ||||| ||| Sbjct 8045 AAATT-ACAGCTGGTGATAGACTAGAGGAAGGAAGGGATCACGTCAAGTCCTCATGACCC 7987 Query 322 TTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAG 381 ||||| ||||||||||||||| |||||||| ||||||||| | ||| | | | | Sbjct 7986 TTATGGGCTGGGCTACACACGTGTTACAATGGTGAATACAAAGAGAAGCTAGAATGAAAA 7927 Query 382 GTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATAT 441 | |||||||| || ||| | | ||||| |||||| ||||||| |||| | || Sbjct 7926 TTGGAGCAAATCTCAAAAAACTCACCCTAGTTCAGATTGTTCTCTGCAATTCGAGAACAT 7867 Query 442 GAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 ||||| |||||| ||||||||||| |||||||| || |||||||||| || || Sbjct 7866 GAAGCCGGAATCACTAGTAATCGTGGATCAGCACGCCACGGTGAATATGTACC 7814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503945856000