Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2029 224 2e-56 seq288 192 1e-46 >seq2029 Length=64692 Score = 224 bits (248), Expect = 2e-56 Identities = 251/335 (75%), Gaps = 14/335 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || ||||| | | |||||||||||| || ||||||| ||||||| Sbjct 50552 TTTACAACCCATAGGCCTTCATCCTT-CACGCGGCATTG-CTCCGTCAGGCTGTCGCCCA 50495 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 50494 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 50435 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||| | |||||||| |||||||||||||| Sbjct 50434 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCATTGCCTTGGTAAGCCATTACCTCAC 50375 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||||||| | | | || ||||| | || | | | |||| Sbjct 50374 CAACAAGCTAATCAGCCGCAAGCCCATCTATTGGC------------GATTTTCATCTTT 50327 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | | | | || | ||||||||| ||||||| | |||||||| | | | ||| Sbjct 50326 CACTTCTCAGCAATACGAGGTATTAGCCATCGTTTCCAATGGTTATCCCTCTCCAAAAGG 50267 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || ||| || | ||||||||||||||||| ||| Sbjct 50266 TAGGTTCTTACGTGTTACTCACCCGTCCGCCACTC 50232 >seq288 Length=17438 Score = 192 bits (212), Expect = 1e-46 Identities = 177/220 (80%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTT--TCACACACGCGGCAT-TGGCTGGATCAGGCTTTCG 57 |||||||| | || || |||| || | |||||| || | ||||||||||||||||| Sbjct 8916 CTTTACAACC--AAAACAGTCTTCGTCGCCCACGCG--ATCTAGCTGGATCAGGCTTTCG 8971 Query 58 CCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 117 |||||||||||||||||| |||||||||| | || | | |||||| |||||||||||| | Sbjct 8972 CCCATTGTCCAATATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCC 9031 Query 118 CAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 ||||||| | ||||||||||||||||||| || ||||| | | |||||| || |||| Sbjct 9032 CAGTGTGGCCGATCATCCTCTCAGACCAGCTAAGGATCTTTGGCTTGGTAGGCTTTTACT 9091 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 |||||||| ||||||| || | |||||||| ||| || Sbjct 9092 CTACCAACTACCTAATCCTACGCAAGCTCATCTCATAACG 9131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071961408000