Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2029 306 1e-80 seq3559 170 7e-40 >seq2029 Length=64692 Score = 306 bits (338), Expect = 1e-80 Identities = 352/468 (75%), Gaps = 18/468 (4%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| || ||| ||||| Sbjct 53489 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGACTGGTATTTCA 53430 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| ||||| |||||| | | |||||||| | || ||||||| ||| ||| || Sbjct 53429 CCGCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTTCACTTGG 53370 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | | |||| |||||| |||| ||||| |||||||| | ||||||||| || | Sbjct 53369 TGTCACCCAAGCTTCATCCTGGTCATGGTTAGATCACCCGGGTTCGGGTCTAGAAAATAT 53310 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG---GGTTAACC 372 ||| |||||||||| |||| ||||||||| ||||| || | | | |||||| Sbjct 53309 GACTTTATCGCCCTATTCAGACTTGCTTTCGCTTCGGCT-CCGGATATGTTTCCTTAACC 53251 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 | || ||| | || |||| |||||||||||||| |||||||| |||| | || Sbjct 53250 TTGCCACA-TTTTCTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGC--GT--- 53197 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 | ||| || |||| || | |||| ||| | ||||||| || |||||||||||| Sbjct 53196 TTAAACGC-------CTCCCACTGGTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCC 53144 Query 493 CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA-CCAAGG 551 || ||||||| ||||||||||||||||||||||||| || |||||||||||| || ||| Sbjct 53143 CCTACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCACCCTAGG 53084 Query 552 AGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||| |||| |||||||| | |||||||||| |||||| Sbjct 53083 AGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 53036 >seq3559 Length=35662 Score = 170 bits (188), Expect = 7e-40 Identities = 363/533 (68%), Gaps = 23/533 (4%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACC-ATCCAGTGCT 111 || ||||||||||| || || ||||| || |||||| || ||| | | |||||| Sbjct 28450 GGTATTCGGAGTTTCCATGGGATCAGTAAGGTTTTGGGCCACCATCACCCAGCGAGTGCT 28391 Query 112 CTACCTCCGGGAA---GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||||| | || ||||| |||| ||| |||||| || |||||| Sbjct 28390 CTACCTCCTTTTTACTGTAAATGTATACGCTCTACCTCAATAGATTTCGCAGAAAACCAG 28331 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCC-TATCCACAGGTCATCCCCTCAGTTTTCA 227 |||| | ||| | ||||||| ||||||||| || |||| ||||||||| || | Sbjct 28330 CTATTTCCAAGCTCGATTGGCTTTTCACCCCATAATCACAAGTCATCCCCATCTATTGCC 28271 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||||||||||||||||| || ||| | |||||||||| |||| ||| Sbjct 28270 ACAGATGTGGGTTCGGTCCTCCAAAACGTATTATCATTTTTTCAACCTGCTCATGATTAG 28211 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||| ||| | |||||||| | | ||| | || || ||| || || ||| | Sbjct 28210 ATCGCTTGGTTTCGGGTCAAATTTAAGAAACTTAGG-GCTCTTTTCAAGCTTGCATTCAC 28152 Query 348 TACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTC 407 | || || | | | | ||| || || || || | ||||| | | |||| | | Sbjct 28151 TCCGCCTCCACTTAAGAGCTTAGGCTTGCTTCATAAATTTA-CTCGCTGACCCATTATGC 28093 Query 408 AAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||||| ||||||| || | | |||| |||| |||| | ||||| ||| Sbjct 28092 AAAAGGTACGCCGTAACTTTTCA---AAAA--------AGCTTCGACTGCTTGTAAGCAT 28044 Query 468 ATGGTTTCAGGTACTATTTCACTCCC-CGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 |||||||| || |||||||||| | |||| | ||||||||||||||||||||| Sbjct 28043 TCAGTTTCAGGATCTTTTTCACTCCCTCTTTAGGGATCTTTTTCACCTTTCCCTCACGGT 27984 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTAT--TTAGGCTTAACGGGTGGTCCC 577 |||||| | |||||| ||| | |||||| ||||||||| |||||||||| Sbjct 27983 ACTTGTTCACTATCGATCA--GAAGAGTATACTTAGGCTTAGAGGGTGGTCCC 27933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817534566400